BAC Information

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BAC

Clone NameMSMg01-399M04
Chromosome2 (Build37)
Map Location 136,652,283 - 136,652,531
singlet/doubletsinglet
Overlap genenone
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911
Downstream geneMkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399M04.T7 (MSMg01no399_m04.b1)MSMg01-399M04.TJ (MSMg01no399_m04.g1)
ACCAG499545AG499546
length721762
length of high quality
(start - end)
249 (74 - 322)94 (96 - 189)
definitionCHROMAT_FILE: MSMg01no399_m04.b1 PHD_FILE: MSMg01no399_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:52 2005CHROMAT_FILE: MSMg01no399_m04.g1 PHD_FILE: MSMg01no399_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAGAGGACCG
CGGAATTCCATAGGTTACATAGATGACGCTTGCCCACGTGGACAAGCCGC
CAGCCGATTTATTAAAGACAACCATCCAAAGTCAGAGAAAGAAATCCCAC
TCGCACCCAGGAACTGTCAAGTGGGAAGTTTGACTTAACCATTCTTATTA
AGAATGTACTAGTGTTTGCTTCCTCGTTTGCGATATCATGGTGGAGCTGC
TTGCAAGCACCCATAGCTCAACCTCTAACCACTCTTTACTTCACATGGGT
CTGCTTTTCACTTATTTGCAGAATGTAAGGCATATTCCTACCGAGAAACC
CCAAGTGAGGGCGTATGCACGGTCAACCTTCAATTCACTCAGAGTCCAGC
CAGTTTGCACTGCAGCCATACTCTTGGTCCTATTTGCTTTTTCATTTCAA
GAATGTGCATAATGCTCACTCCTGCTTTATGTTACCTGCTTCTGTACAAG
GTTTGGATGACCCCATCCATCCTCCTTGGTTTACTAACCTCACATACCAC
CTTTGAGTGCTGATTTTGGGATCTTTCCTTTCTAAATTACCACACTCCCT
TCAGCATATCTCCACGGCTTTATCTGCCCCTGAGGATTTACCCAGCCTCC
CCCAGTACACTCCTTTAATCCTGATTGTGCCTGCCGCCTGCTGCGCAGTG
CTGCCCTTTCATACCCTGCTA
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGGGACCACGTTGTGTGATA
ATAGCACTGAGTGTAGTCTCCAAAGAGATGGATGTGTATAGGAGGGAGTG
TCACATTTCTAAACCACGGCCAGAAAGTTGCTCTCTGTGTGCGCATGTGT
ATCTGTAGGTGTTCACGCATGGTTGTATGCAAATGGACCGCCGATGGCCA
GCATGTCAAATCCACTGTTTGGTTGTAACTCATGTCCCATGTATCTCAGA
ACGTCCTTCCCATTTAACTGTGCTCTTTGCAATGCCGACTGTCCTTCCCT
ACCCCTTTTAAACACACCCCTTTCATAGCTTATGCTCTGGCTCATCTGTA
TCGTCCGTTTTCTCCCTTATTTCACTCACAATCTTCTTATTTTAACTTCT
CCCATCTCCCTCTAGCTCTCCCCCTTACTACATAAAATTCTTTCTTTGCA
CGCTACCTGTTTCCATTATCCCACTCCCCACCTTTTTTTTTTTTTTTTTC
CCCGCCTTTACATTCTGCTACTCCCCCCTTTCCTTATCTTTCGATCCCCC
CCCCCTTTACTGTTTTGATTGTCCCCCACCCGTTCCGTATCGTTTCCCTT
CGCCCTCCATTTGTACCCATCTTNTTTACTCTTCTTTTTCTTTCTCCCTC
CTTCTCTTCCCTCGCTCTTTCTTTCTTCCTTCCCCTTTTTTGCTTTTATT
CCCCCACCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_m04.b1 MSMg01no399_m04.b1 CHROMAT_FILE:
MSMg01no399_m04.b1 PHD_FILE: MSMg01no399_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:52 2005
         (249 letters)



>mm_chr2_136652083_136652731
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacgcttgcccacgtggacaagccgccagccgatttattaaagacaaccatccaaagtc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 449 tgacgcttgcccacgtggacaagccgccagctgatttattaaagacaaccatccaaagtc 390

                                                                       
Query: 61  agagaaagaaatcccactcgcacccaggaactgtcaagtgggaagtttgacttaaccatt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agagaaagaaatcccactcacacccaggaactgtcaagtgggaagtttgacttaaccatt 330

                                                                       
Query: 121 cttattaagaatgtactagtgtttgcttcctcgtttgcgatatcatggtggagctgcttg 180
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 329 cttattaagaatgtactagtgtttgcttcctcgtttgcaatatcatggcggagctgcttg 270

                                                                       
Query: 181 caagcacccatagctcaacctctaaccactctttacttcacatgggtctgcttttcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 caagcacccatagctcaacctctaaccactctttacttcacatgggtctgcttttcactt 210

                    
Query: 241 atttgcaga 249
           |||||||||
Sbjct: 209 atttgcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)