BAC Information

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BAC

Clone NameMSMg01-399O24
Chromosome2 (Build37)
Map Location 133,407,625 - 133,407,993
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik, Bmp2
Downstream geneHao1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399O24.T7 (MSMg01no399_o24.b1)MSMg01-399O24.TJ (MSMg01no399_o24.g1)
ACCAG499680AG499681
length731767
length of high quality
(start - end)
374 (46 - 419)---
definitionCHROMAT_FILE: MSMg01no399_o24.b1 PHD_FILE: MSMg01no399_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:04 2005CHROMAT_FILE: MSMg01no399_o24.g1 PHD_FILE: MSMg01no399_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCCCAGGGTTTCCCCTGCCTCCCAGTAAATAGACATACTGTAAATA
CTTGGAGAATGTAAGGAATTGGAAAATTGCTGCATAGTCAGATAGCGTGT
CTTTCTAACATCATGCCTCTCTGTTGTCAATCATGAGCCTTCCCAGGATA
ACTTACAACACTCAGTAGATTCTGAGAGCTAATGAGGAGCACACAGGCAT
AAGAGATCAGTGGAGCGACCTTACTGAGGCATCTGTCTTCAGGTATATGG
ATTGTTTTCTCTGGTACACAAATGTTTGCAATTAGTGCTATCACAGGCAA
GCATTACAGAGTATGTGAATTTAGATGTATGGATGTGAGCTATGCTAATT
TTTGTTGCATCTCCTAATGCACCCACAAGCTATATGGCACACTAATAAAA
AAAAACACAAAATGGTATAAAGAAGACCCAAAATGTAACAGCTACAGAAG
TGACTACTGAAATGAGATACTCTTTTGCAGATGAAACACCCTCTAGTTTG
TTAGAAAACAGAAAAGCATGGTCTTTACAATGCCAAGGGCTGGGTATGGT
GCTGCAACCCTTTAATTCCAGAATATATGATGCAGAGGCAGAAGGATATC
TGTGAGTTCCGTGACAACTCGGTCTACATAGTGAGTTTCAGGCCAGCCAT
GATTACTTAGTCAGAGCATGTCTCAAGAATA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACTTCAGGCCTTCGTTTGCATGGACA
TGCACGTGCATAGAAGTGCTACAAAGCAATGAGGACTGAGGTGAGGAGAT
TCACTCTATCCAGAGAGATGTCTCAGTCAGTAGGGACACCTGCCCTCTTA
ATAGAAGACAACTCTGAACACTATGCTCTGGCAAGGTTAGGACATGGCCG
CTTACCTTCAACTTGCCAATTTTAAGGCTAATTCAAACAATAATTTTGAA
AGGGTGCTACCAAGACTAGTCTATATCTACAATGGGCCTGGATCTGGAGT
ATTGGCTGCCATTTTCCGATTTCTATTCATAAAGGGCATACCTTTGGTAC
AGTGCGTGGGGGAGCTGCCTAAATACCTGCAGCTTGATCAGCTTATGCTT
AATTATACCTAGTATATATACTCCGGGGACTTTCCCATTCCTCTTTCTAA
TTATCTTAGAATACCTTTTCTTTGACTGTTCATCTAATCTTCTTGTTTCC
TCTCACGCCCTGTAGCCTTGACGTCCCGACGCTGTACTCTTTATTAACTC
CTACAGTTCTTTCCTCTGAATAATTGCCCCACCTTTTAAATACACCTTCC
CTTCTCCGGGCTTTTTAGCACATTAATTTATCTCTATTTGTACATCCCCG
CCACCTGATCCTTACCCCCTTGTGCACTTGGACTCCTGCACATTCTTCTT
ATTTTACTCCGTCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_o24.b1 MSMg01no399_o24.b1 CHROMAT_FILE:
MSMg01no399_o24.b1 PHD_FILE: MSMg01no399_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:04 2005
         (374 letters)



>mm_chr2_133407420_133408193
          Length = 774

 Score =  644 bits (333), Expect = 0.0
 Identities = 360/369 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcccagggtttcccctgcctcccagtaaatagacatactgtaaatacttggagaat 65
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattcccagggtctccactgcctcccagtaaatagacatactgtaaatacttggagaat 515

                                                                       
Query: 66  gtaaggaattggaaaattgctgcatagtcagatagcgtgtctttctaacatcatgcctct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtaaggaattggaaaattgctgcatagtcagatagcgtgtctttctaacatcatgcctct 455

                                                                       
Query: 126 ctgttgtcaatcatgagccttcccaggataacttacaacactcagtagattctgagagct 185
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 454 ctgttgtcaatcatgagccttcccagtatcacttacaacactcagtagattctgagagct 395

                                                                       
Query: 186 aatgaggagcacacaggcataagagatcagtggagcgaccttactgaggcatctgtcttc 245
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 394 aatgaggagcacacaggcataagagatcagtggagcaaccttactgaggcatctgtcttc 335

                                                                       
Query: 246 aggtatatggattgttttctctggtacacaaatgtttgcaattagtgctatcacaggcaa 305
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aggtatatggattgtcctctctggtacacaaatgtttgcaattagtgctatcacaggcaa 275

                                                                       
Query: 306 gcattacagagtatgtgaatttagatgtatggatgtgagctatgctaatttttgttgcat 365
           || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 274 gcgttacagagtatgtgaatttagatgtatgcatgtgagctatgctaatttttgttgcat 215

                    
Query: 366 ctcctaatg 374
           |||||||||
Sbjct: 214 ctcctaatg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)