BAC Information

Click to search

BAC

Clone NameMSMg01-400B19
Chromosome2 (Build37)
Map Location 155,518,875 - 155,717,697
singlet/doubletdoublet
Overlap geneEdem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
Upstream geneChmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap
Downstream geneGdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400B19.T7 (MSMg01no400_b19.b1)MSMg01-400B19.TJ (MSMg01no400_b19.g1)
ACCAG499812AG499813
length794777
length of high quality
(start - end)		489 (69 - 557)488 (74 - 561)
definitionCHROMAT_FILE: MSMg01no400_b19.b1 PHD_FILE: MSMg01no400_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:18 2005CHROMAT_FILE: MSMg01no400_b19.g1 PHD_FILE: MSMg01no400_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,518,875 - 155,519,361)(155,717,210 - 155,717,697)
sequence
NTTTCTATATTTGCGGGCGCTAAACGACTACTATTTCGAGAGATCCGCGG
AATTCCTGGCTTCTCAAAACCTCGGAAGCAGGGTGGTGCTGACTCTCCCC
ACTTTCTCTTCTAGGAGGCTATCTTGTAACAAAAATAAGTTGAGTGTGCC
AAATTAGGATGCCATGAAGTTTGCTACTTGTAACTAAGGTGGCTATAATT
TGTTGCCCAAACCAAAAGTCCTTAAAAAGTGAAATGATGTAATAAGTAAC
TTGCAGTGGAACAACAGCAGGCATTTGAGATCGCTGCCAAGGCAAACTAG
ACTGTGACTGACATCTGCATGCTACTTGCAAGGTGTGGCTCCCACTCGCT
CCAGCAGATCACTGCCTGGTGACCTGGTTTAAGACAAAGAAAATAGGATA
AGGAGAGATGAGTCAGTGGGTAGAAGCACTGGCTGCCAAAACTGACGACC
TAAGTTGTTGGGTCCAATGAACCCATGTTGGTGAAAGGAGAAAATAATTC
CTCCAAACTGCCCTCTAATCAATCTCTCTCTCCCTCTCCCTCTCCCTCTC
CCTCTTCCTCTTCCTCTCCCTCTCCCTCTCCCTCTTCTTTTTCCTTTCCT
CTCTCCCCTTTCCATTTTCTTTTTTATTTTTCCTTACTAATTATATTATT
AAATTCTATTTTTTTTTCTTTTTTTTTTTTCTCCTCTTCTATTTTCATTA
CTCCCTTTCTTTTTTTTCTTTTTCTTTCTCTTCCCTCCTATTCACTTTTT
TCTTTATTTTATTCCTTTTACTCCTCCCTCTCTACTCTTTATAT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTACCTCACTGTTGCTGTTGATGAA
TTAGCCTCCTATGACACTTAAGCATCAAAACACTGCATCTTTTCAGGTGA
GAGGCTGACAAGAACAAATTAATTTATTTAAAAAGTACTATTGAACCTTA
CCCAGTGCATTTCTGCTGTGCAGTGTGCTCTCTATCCCGTGCCCAGCCTT
TTCACGGCCTGTTTCATTATCATCTCCAAGTCTCATTCATATCTTAGGTA
CTGTCTGGGTTCAGAGGTTAAAAGTTAGAATGAAATTGCCAATAGATCCA
TTTGAGGTCGATAGTGAACCTCTGGTTGGAAAGCTGCAGGCTCTGTGTCT
GGAGAGATGGCCCTGAAGTTAACAGCAGATACAGCTTAGTCAGAGGATCT
GAGTTTGGTCCCCAGCATTCAACTTGGGCTGCTCATACCTTCCTCTAACT
CAGCTCCAGGGAACCCAGTGCCTTTGATCTCCAAGGGCATTAAGTTCATA
TGCACATACCCAGACACACACACACTTTAAAATAAATCTTAAATTAAAAA
AAGCTGGATGTCCCCCAGACATTTATTCTTTTTATGAACAGAATTTGAAG
TTGGCCATTCTATTACTTAAAACTTTACATCTTTCCTGCTGGAGAGGTGT
TACTTTTAAAAAACTTTCCTTTTGGCCCCCCCCCCGGGGTTGGTTTTAAT
ATTTGAAAAAAAAAATAAAGCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_b19.b1 MSMg01no400_b19.b1 CHROMAT_FILE:
MSMg01no400_b19.b1 PHD_FILE: MSMg01no400_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:18 2005
         (489 letters)



>mm_chr2_155518675_155519563
          Length = 889

 Score =  942 bits (487), Expect = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctcggaagcagggtggtgctgactctccccactttctcttctaggaggctatcttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctcggaagcagggtggtgctgactctccccactttctcttctaggaggctatcttgta 260

                                                                       
Query: 61  acaaaaataagttgagtgtgccaaattaggatgccatgaagtttgctacttgtaactaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaaataagttgagtgtgccaaattaggatgccatgaagtttgctacttgtaactaag 320

                                                                       
Query: 121 gtggctataatttgttgcccaaaccaaaagtccttaaaaagtgaaatgatgtaataagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggctataatttgttgcccaaaccaaaagtccttaaaaagtgaaatgatgtaataagta 380

                                                                       
Query: 181 acttgcagtggaacaacagcaggcatttgagatcgctgccaaggcaaactagactgtgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttgcagtggaacaacagcaggcatttgagatcgctgccaaggcaaactagactgtgac 440

                                                                       
Query: 241 tgacatctgcatgctacttgcaaggtgtggctcccactcgctccagcagatcactgcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacatctgcatgctacttgcaaggtgtggctcccactcgctccagcagatcactgcctg 500

                                                                       
Query: 301 gtgacctggtttaagacaaagaaaataggataaggagagatgagtcagtgggtagaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgacctggtttaagacaaagaaaataggataaggagagatgagtcagtgggtagaagca 560

                                                                       
Query: 361 ctggctgccaaaactgacgacctaagttgttgggtccaatgaacccatgttggtgaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggctgccaaaactgacgacctaagttgttgggtccaatgaacccatgttggtgaaagg 620

                                                                       
Query: 421 agaaaataattcctccaaactgccctctaatcaatctctctctccctctccctctccctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaaataattcctccaaactgccctctaatcaatctctctctccctctccctctccctc 680

                  
Query: 481 tccctct 487
           |||||||
Sbjct: 681 tccctct 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no400_b19.g1 MSMg01no400_b19.g1 CHROMAT_FILE:
MSMg01no400_b19.g1 PHD_FILE: MSMg01no400_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:18 2005
         (488 letters)



>mm_chr2_155717176_155718063
          Length = 888

 Score =  936 bits (484), Expect = 0.0
 Identities = 487/488 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattacctcactgttgctgttgatgaattagcctcctatgacacttaagcatcaaaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cattacctcactgttgctgttgatgaattagcctcctatgacacttaagcatcaaaacac 463

                                                                       
Query: 61  tgcatcttttcaggtgagaggctgacaagaacaaattaatttatttaaaaagtactattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgcatcttttcaggtgagaggctgacaagaacaaattaatttatttaaaaagtactattg 403

                                                                       
Query: 121 aaccttacccagtgcatttctgctgtgcagtgtgctctctatcccgtgcccagccttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aaccttacccagtgcatttctgctgtgcagtgtgctctctatcccgtgcccagccttttc 343

                                                                       
Query: 181 acggcctgtttcattatcatctccaagtctcattcatatcttaggtactgtctgggttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acggcctgtttcattatcatctccaagtctcattcatatcttaggtactgtctgggttca 283

                                                                       
Query: 241 gaggttaaaagttagaatgaaattgccaatagatccatttgaggtcgatagtgaacctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaggttaaaagttagaatgaaattgccaatagatccatttgaggtcgatagtgaacctct 223

                                                                       
Query: 301 ggttggaaagctgcaggctctgtgtctggagagatggccctgaagttaacagcagataca 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 ggttggaaagctgcaggctctgggtctggagagatggccctgaagttaacagcagataca 163

                                                                       
Query: 361 gcttagtcagaggatctgagtttggtccccagcattcaacttgggctgctcataccttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gcttagtcagaggatctgagtttggtccccagcattcaacttgggctgctcataccttcc 103

                                                                       
Query: 421 tctaactcagctccagggaacccagtgcctttgatctccaagggcattaagttcatatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tctaactcagctccagggaacccagtgcctttgatctccaagggcattaagttcatatgc 43

                   
Query: 481 acataccc 488
           ||||||||
Sbjct: 42  acataccc 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |