NNTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTCTCCTACCTTGCTCACCTTTCAATCTCATGCTCATTCC
TGTCCTGTTGCCATGCTGTGATGCAGCCAAGGGACGCTCACAGGAACCCC
CACCCCCAACTAGGAGCTAAGTAAACCTCTCTTTTTTATAAGTTACTCAG
TCTTGGATATTTTGTTATATCAACAGAAAGTGGACTGATACATCTCCTAA
TACAACTGCATTCTGAAGTTTTGGGGGCTAGGAAATCAATATGTGTCTAA
GGAGGCTGTAAATCAATCCACAACACCCATAAAGGTAAGGGGCTGATGAT
TTCCTGTGACCTGGGGAATCACACGCCCCCTTGATGGATCAGAGAATGGG
AGATAGGAAGCTCTCCCTGATTCTAGACGCCAAGACTGAAATTCCAGCTC
CTGTGAGATTTTACTCAGCCCAGTGTAGGGGAACGTGGAAGATGGCTTGT
TCTTGTTCCTCATCTTGCCTCAGGCAGGGTAAGCAAATCCTTACTTGAGT
GTAAACCCACTGTGTAGCTTTTTCTGGAAGCTGAAAACGTCTTATGTGTT
GGAATAGAATGCATGTTGTCTACTTACAAAAAGGAGGTGGAGGAAAAAAA
GGGTAAAAAAGAAAATCCTGGAATTGGGCCAAAGGCCAGGGGCAGAACAC
TGGCCCCCCAGTTAAAGGGCTTGGATTTTATCCCCGGTACCAGGGGGGGA
AAAAAAAAAAAACCCTGGCTCCGCGAGGN

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATAAAATGATGAAATCT
AAATTCCAGGTACTCACAACTCAGTCCCTTGTTTTTCTTTTAAACTTTAC
TTTATCTCTTATCATATATGTTCCTATAATGTGTGTGCATGTGTTCCTAC
GATGTGTGTGCACGTGGTATGTGTGGGTGAGTACCAGTGTGCTCATGCCA
GTTATGAATGTGGAGGTCAGAAGACAGCTTTTGGGAGTCGATTTGAGGTT
TGAACTTGGGTTATGAGAATTTGTGCTGCTTTGTCCTTAGCTGCTGAGCC
ATTTTGTTGGCCCATAATCCTGTTTAAAATCTTAATCTGTGTGTTAGACA
ATCAATGTGTCAGAGAACTTTGCCTCTAGTAAAGTGTCAAGAAAGTGTGA
GGAAGTGCCAAACATATTGGCAGCTCATCTGGCATCAAAGACCTTTGCAG
GGTAAAGAATTTTCTTATGAAAGAGATGACACCAGCAAAGCCAAACTTCA
GGTAGACTTAGCTCCTGAAATGTCTTGCTTCTCTGTCACCCCTGGATAGG
ACAGGATGGCTTCTTACCCTTGTTTATGGTACCTCCCAAGAAGCCCCCCT
CAATAAAAACCCCTCTTTTTTTTTATTTTCTGGCTTGAGTTACCTTCCTG
CTTTTTTTATATCTTTAAAAAATCCCTCCTCTCAATTGGTCTTATTTTTG
TCTCGCTCCTTTTTAAAAACCTTAATATATTTAACCTTAGGG

Query= MSMg01no400_b21.b1 MSMg01no400_b21.b1 CHROMAT_FILE:
MSMg01no400_b21.b1 PHD_FILE: MSMg01no400_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:19 2005
         (480 letters)



>mm_chr2_146400694_146401573
          Length = 880

 Score =  915 bits (473), Expect = 0.0
 Identities = 476/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttctcctaccttgctcacctttcaatctcatgctcattcctgtcctgttgcc 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttctcccaccttgctcacctttcaatctcatgctcattcctgtcctgttgcc 263

                                                                       
Query: 64  atgctgtgatgcagccaagggacgctcacaggaacccccacccccaactaggagctaagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgctgtgatgcagccaagggacgctcacaggaacccccacccccaactaggagctaagt 323

                                                                       
Query: 124 aaacctctcttttttataagttactcagtcttggatattttgttatatcaacagaaagtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaacctctcttttttataagttactcagtcttggatattttgttatatcaacagaaagtg 383

                                                                       
Query: 184 gactgatacatctcctaatacaactgcattctgaagttttgggggctaggaaatcaatat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gactgatacatctcctaatacaactgcattctgaagttttgggggctaggaaatcaatat 443

                                                                       
Query: 244 gtgtctaaggaggctgtaaatcaatccacaacacccataaaggtaaggggctgatgattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgtctaaggaggctgtaaatcaatccacaacacccataaaggtaaggggctgatgattt 503

                                                                       
Query: 304 cctgtgacctggggaatcacacgcccccttgatggatcagagaatgggagataggaagct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctgtgacctggggaatcacacgcccccttgatggatcagagaatgggagataggaagct 563

                                                                       
Query: 364 ctccctgattctagacgccaagactgaaattccagctcctgtgagattttactcagccca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctccctgattctagacgccaagactgaaattccagctcctgtgagattttactcagccca 623

                                                                    
Query: 424 gtgtaggggaacgtggaagatggcttgttcttgttcctcatcttgcctcaggcaggg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgtaggggaacgtggaagatggcttgttcttgttcctcatcttgcctcaggcaggg 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no400_b21.g1 MSMg01no400_b21.g1 CHROMAT_FILE:
MSMg01no400_b21.g1 PHD_FILE: MSMg01no400_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:19 2005
         (403 letters)



>mm_chr2_146587880_146588682
          Length = 803

 Score =  632 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttataaaatgatgaaatctaaattccaggtactcacaactcagtcccttgtttttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tttataaaatgatgaaatctaaattccaggtactcacaactcagtcccttgtttttcttt 280

                                                                       
Query: 61  taaactttactttatctcttatcatatatgttcctataatgtgtgtgcatgtgttcctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taaactttactttatctcttatcatatatgttcctataatgtgtgtgcatgtgttcctac 220

                                                                       
Query: 121 gatgtgtgtgcacgtggtatgtgtgggtgagtaccagtgtgctcatgccagttatgaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gatgtgtgtgcacgtggtatgtgtgggtgagtaccagtgtgctcatgccagttatgaatg 160

                                                                       
Query: 181 tggaggtcagaagacagcttttgggagtcgatttgaggtttgaacttgggttatgagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tggaggtcagaagacagcttttgggagtcgatttgaggtttgaacttgggttatgagaat 100

                                                                       
Query: 241 ttgtgctgctttgtccttagctgctgagccattttgttggcccataatcctgtttaaaat 300
           |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  ttgtgctgcaatgcccttagctgctgagccattttgttggcccataatcctgtttaaaat 40

                                                  
Query: 301 cttaatctgtgtgttagacaatcaatgtgtcagagaact 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  cttaatctgtgtgttagacaatcaatgtgtcagagaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)