Query= MSMg01no400_d07.b1 MSMg01no400_d07.b1 CHROMAT_FILE:
MSMg01no400_d07.b1 PHD_FILE: MSMg01no400_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:26 2005
(553 letters)
>mm_chr2_163034204_163035158
Length = 955
Score = 959 bits (496), Expect = 0.0
Identities = 533/546 (97%), Gaps = 2/546 (0%)
Strand = Plus / Minus
Query: 10 ttcaggtcccttcacccacaggcccacaaatgcccacaactctagctctagaggatccaa 69
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttcaggtcccagcacccacaggcccacaaatgcccacaactctagctctagaggatccaa 536
Query: 70 taccctcttctggcctccacaggcaactgtatacatgtgttcatacaggcatacagacat 129
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 taccctctcctggcctccacaggcaactgtatacatgtgttcatacaggcatacagacat 476
Query: 130 acacatgaataagataataacgctttgaaaaaaacatcaagcga--cttactgtgtacat 187
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 475 acacatgaataagataataacgctttgaaaaaaacatcaagcgactcttactgtgtacat 416
Query: 188 aaattttcaaaatttcagaggcctgctactaaccttccattttaaaactgcaaaaccggc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaattttcaaaatttcagaggcctgctactaaccttccattttaaaactgcaaaaccggc 356
Query: 248 tgggggagggcttgcagcctacgcacacacccacgtttggatccccagaccccagtaaaa 307
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgggggagggcttgcagcctaagcacacacccacgtttggatccccagaccccagtaaaa 296
Query: 308 gccaggcatggaggcgtacgcctatagtccagtgctggtgggctggagccaggtgggtct 367
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 295 gccaggcatggaggcgtacgcctataatccagtgctggtgggctggagccaggtgggtcc 236
Query: 368 tagaagactgttggccagccagtctagctcaagtgttgagttccaggttcgaggagaaac 427
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 235 tagaagactgttggccagccagtctagctcaagtgttgagttccaggctcgaggagaaac 176
Query: 428 tggtcttactatacataaaggaagacacctgttcaattgtgctttctgttgctatggtaa 487
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tggtcttaatatacataaaggaagacacctgttcaattgtgctttctgttgctatggtaa 116
Query: 488 acaccacgatcaaaagctgcctgaggagggaagggttgatttagcttacagcttacagcc 547
||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 115 acaccacgatcaaaagcagcctgaggagggaaaggtttatttagcttacagcttacagcc 56
Query: 548 cctcac 553
||||||
Sbjct: 55 cctcac 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 955
Length adjustment: 10
Effective length of query: 543
Effective length of database: 945
Effective search space: 513135
Effective search space used: 513135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_d07.g1 MSMg01no400_d07.g1 CHROMAT_FILE:
MSMg01no400_d07.g1 PHD_FILE: MSMg01no400_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:26 2005
(487 letters)
>mm_chr2_162842777_162843662
Length = 886
Score = 888 bits (459), Expect = 0.0
Identities = 480/487 (98%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 1 ccggcctggggacctaccatctttatcggtctttaatagcagttgctagcaaatgaacaa 60
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ccggcctggggacctaccatc-ttattggtctttaatagcagttgctagcaaatgaacaa 259
Query: 61 tataggttccttattaaaaagtgactccttcagtttggatacagtctttaccgggaaacg 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tataggttccctattaaaaagtgactccttcagtttggatacagtctttaccgggaaacg 319
Query: 121 ggccagcccagcgctagccccgaacccctacccaacagcccccagcgtccgcagccacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggccagcccagcgctagccccgaacccctacccaacagcccccagcgtccgcagccacca 379
Query: 181 gacacagcccgtccgtcgcgctgtcgtcatcacgccacgacggaagtcactcggggcccg 240
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gacacagcacgtctgtcgcgctgtcgtcatcacgccacgacggaagtcactcggggcccg 439
Query: 241 gagccacgtcttctcggcgcgcggccttggatacctggcggcctctggcctcaggtaagg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagccacgccttctcggcgcgcggccttggatacctggcggcctctggcctcaggtaagg 499
Query: 301 agaggtcgggttgtgcgggccaccaggtcgttggtctggctggagacgatgacggcctcg 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaggtcgggttgtgcgggccgccaggtcgttggtctggctggagacgatgacggcctcg 559
Query: 361 ccatgccgctctggagacccctaggccagccttgtgggaatcccgaggtcggcagaggta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccatgccgctctggagacccctaggccagccttgtgggaatcccgaggtcggcagaggta 619
Query: 421 aactgaggacgcggaagtgggctgggaactggtcctggcgatgatgtagaatttctagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aactgaggacgcggaagtgggctgggaactggtcctggcgatgatgtagaatttctagct 679
Query: 481 cctcgga 487
|||||||
Sbjct: 680 cctcgga 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space: 417852
Effective search space used: 417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
