NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGC
GGAATTCTTTGTTTATCTCTGTAACCCATCTTTAAAAGGGTTATTTGGTT
CTCTGGAGTCTAACTTCTTATGTTCTTTGCATATATTGGATGTATTGGAT
GTTATCTCTCTACTTGTCCTTTTATAAAGTTTCTCTAAAATGGAAACTTT
GTAGCATTTTAGTTATTTATTTTAATATAATTATTTAGTTTATTCTTCAA
CAGTTTCATACGTATAAAAATGTACCATGATCATACCCACTTCCATCTCT
CCCAGGCATCCATGCCCAACTGTTTAATTTTTAGTTAATTCAGGTGCAGT
TAAACTGACAATGAAGCTCAGTCATTATATTTGATGACCCGAAGAGATTC
ATTTATGCATTGAGTGTTGTCAGAGGAACATGTGAGAAAAGTATTTGTCT
GATTCCACATTTTTAAACTATAAGCACTAATATGTTGCTCATTGGCTTCT
TATACATATTTCATATATTTTGTTTTAATCTTCATATTAGTCTTATCTTT
GGCATTATCCATATTATTACATGGCAGATGAAAATAAACTAAAGAGGAGA
TAAAAAGGACCTTGGCCATGACGAGAGAATAATATCTGAGCCTGCCGACA
CAGTTTCCTGAAACACTGATGAAATGAGGTGAAACATACCTCGTGGAGAA
TGCAGATTGCCAACGGGAATCCTGATTCTCCCCTAAAAACATCATTAGGT
TACCCCACCAAAATGGCTGTGG

NCAACAGACCTGGCGCCTTCACAGGACAAAGTTCAAACTGAGTCGACCAT
TAAATATTCCTGACCATTTATCTCGCATGAACTAAAAGAATTCGAACGTT
AAAAAAACATCAAACAGAAGCCCAACAAATTTAGCCAACCCCACCCAAAG
AAAAAGTTTAGAATTTTTTTCAAAAAAGGGGAAACTTTTCCAAAAAAAAA
AGCCAATTTTAAACAACCCCGCCCAAAAAATTAANANAAAACAAAACCCC
CAAAAAAAGGAATTCACGGGCGGAGCGGGGCGAAAAANACAAANNNNNNA
NATNTNNNNAAAAAAAAAANTTAATCCGGGGGGGGGCCGGGGGGCTGCTG
GGAGAGAAAAANNACANNANNNNAAAAAAAAAAAACTGGGGGGGCAAAAA
AAAAAAAANGGGGGGCGCT

Query= MSMg01no400_j24.b1 MSMg01no400_j24.b1 CHROMAT_FILE:
MSMg01no400_j24.b1 PHD_FILE: MSMg01no400_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:59 2005
         (542 letters)



>mm_chr2_53906151_53907092
          Length = 942

 Score =  876 bits (453), Expect = 0.0
 Identities = 514/539 (95%), Gaps = 9/539 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctttgtttatctctgtaacccatctttaaaagggttatttggttctctggagtct 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattctttgtttagatctgtaacccatctttaaaagggttatttggttctctggagtct 272

                                                                       
Query: 64  aacttcttatgttctttgcatatattggatgtattggatgttatctctctacttgtcctt 123
           ||||||||||||||||||  ||||       ||||||||||||||||||||||||| |||
Sbjct: 273 aacttcttatgttctttg--tata-------tattggatgttatctctctacttgttctt 323

                                                                       
Query: 124 ttataaagtttctctaaaatggaaactttgtagcattttagttatttattttaatataat 183
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttataaagtttctctaaaatagaaactttgtagcattttagttatttattttaatataat 383

                                                                       
Query: 184 tatttagtttattcttcaacagtttcatacgtataaaaatgtaccatgatcatacccact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttagtttattcttcaacagtttcatacgtataaaaatgtaccatgatcatacccact 443

                                                                       
Query: 244 tccatctctcccaggcatccatgcccaactgtttaatttttagttaattcaggtgcagtt 303
           ||||||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||| 
Sbjct: 444 tccatctctcccatgcatccatgaccaactttttaagttttagttaattcaggtgcagtc 503

                                                                       
Query: 304 aaactgacaatgaagctcagtcattatatttgatgacccgaagagattcatttatgcatt 363
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 504 aaactgacaatgaagctcagtcatcatatttgatgacccgaagagattcatttatgtatt 563

                                                                       
Query: 364 gagtgttgtcagaggaacatgtgagaaaagtatttgtctgattccacatttttaaactat 423
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 564 gagtgttgtcagaggaacatgtgagaaaaatatttgtgtgattccacattttttaactat 623

                                                                       
Query: 424 aagcactaatatgttgctcattggcttcttatacatatttcatatattttgttttaatct 483
           |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 aagcactaatatgttgctcaatggcttcatatacatatttcatatattttgttttaatct 683

                                                                      
Query: 484 tcatattagtcttatctttggcattatccatattattacatggcagatgaaaataaact 542
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcatattagtcttatctttggcattatccatattattacatggcagatgaaaataaact 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)