BAC Information

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BAC

Clone NameMSMg01-401A17
Chromosome2 (Build37)
Map Location 162,791,927 - 162,923,404
singlet/doubletdoublet
Overlap geneL3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6
Downstream geneLOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401A17.T7 (MSMg01no401_a17.b1)MSMg01-401A17.TJ (MSMg01no401_a17.g1)
ACCAG500522AG500523
length744761
length of high quality
(start - end)		576 (76 - 651)494 (78 - 571)
definitionCHROMAT_FILE: MSMg01no401_a17.b1 PHD_FILE: MSMg01no401_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:34 2005CHROMAT_FILE: MSMg01no401_a17.g1 PHD_FILE: MSMg01no401_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,791,927 - 162,792,502)(162,923,094 - 162,923,404)
sequence
AATTAGAAGTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAGTTACTCAGAGAGAATCAAAGTCATAGCGTGAGATAGGAAG
CTGAAGACCCCAGATCTCATTCTTTCCTTAGCTGTGACTCGCTTTTGTGG
GCTTGGATAGGTTCCTTTGCCTCTCTAAGCCAACCTTACCATCTGCAAAA
TGGGTCTCACAATTCTTGTCCTATACAAGGACTGAATGGGAATGAATGGC
TTTTTAGCCAGTGAAACTCTGAGAAGCCATGGCCAGAGGCAGTCACTCTG
TAGGTGGCCCCTGTATTCTTCCTAAGATCTTGACATAGGCTTGGAGAGAA
CCCCTGAGCCCAGCCAACCTCCTGACTGAGCTGGGCTCTCAGAGCAATAC
CTGACCCCCCTGAGGGCCTTTCTTCCCCAGCTCCACTTTGATGGCTGGAG
TCACAATTATGATTTCTGGATTGATGCCGATCACCCAGACATCCACCCTG
CAGGCTGGTGCTACAAGACAGGACATCCCCTGGAGCCTCCTCTCCGTGTG
TACCCCCCGGGGCACTCTTCTCTTTCCCTTTCTATCAATCTCTGACAACC
CCACCAGGGCTCCAGTGCCCACAGTGAACCTGGGATGCCTAGCCCCCTAA
GTAACTCCTTAGGACTTCATGCTACACTAAACCAAGGCATGCCCACAGCC
CTAGCAAAACTTCCTTCCCCCTAATAGCGGATACTCAATGGCAG

NCGATGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGATCCTGTAGGAGCCGAACAC
CATGGCCAGATAAATGCCATTTAAAATGGACCACAAAGAAGTAGAAACCT
ACCAGGCACTGAATAGTAATTTAAATAACAAGTATCTATTGGCCTCTTGT
CCCATGCTGTAGCAAAAGTTCCTGATGAAAGCAAAAGAGTTTATTTTGGC
TCAAAATTCGAGGGATGCGGGCTGGCGAGATGGCTCAGCAGGTAAGAGCA
CTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT
GGCTCACAACCATCCAGAATGAGATCTGACGCCCTCTTCTGGTGCATCTG
AAGCCAGCTACAGTGTACTTACATATAATAATAAATAAATCTTTTTAAAA
AAAATTCGAGGGATGCAGTCCATCATGGCAAAGGACACGCAGTGGTCACA
TCACATCTGCAGTTGGGAAGCAGAGAGAGTTCACCGCTATGGTGTACATT
ACTTCTCCTTTTCATTCAGCCTGGAGTGTCACCCCATGTGGTAGTACAGA
CCATATTTAGGTAGTCTTCTATAGGATTCAAATCCTACCACGTTAACATA
TTAACCACTATATAAACCCACCTAAAGAGAAACTATATCCAGGCCCTGGT
GGTGCATGTCTCTTATCTCACCACTTTGGGATGCAGAAACAGGCCTTTTT
TTGTCTTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_a17.b1 MSMg01no401_a17.b1 CHROMAT_FILE:
MSMg01no401_a17.b1 PHD_FILE: MSMg01no401_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:34 2005
         (576 letters)



>mm_chr2_162791727_162792702
          Length = 976

 Score = 1075 bits (556), Expect = 0.0
 Identities = 571/576 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtcatagcgtgagataggaagctgaagaccccagatctcattctttccttagctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtcatagcgtgagataggaagctgaagaccccagatctcattctttccttagctgt 260

                                                                       
Query: 61  gactcgcttttgtgggcttggataggttcctttgcctctctaagccaaccttaccatctg 120
           ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactcacttttgtggacttggataggttcctttgcctctctaagccaaccttaccatctg 320

                                                                       
Query: 121 caaaatgggtctcacaattcttgtcctatacaaggactgaatgggaatgaatggcttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaatgggtctcacaattcttgtcctatacaaggactgaatgggaatgaatggcttttt 380

                                                                       
Query: 181 agccagtgaaactctgagaagccatggccagaggcagtcactctgtaggtggcccctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccagtgaaactctgagaagccatggccagaggcagtcactctgtaggtggcccctgta 440

                                                                       
Query: 241 ttcttcctaagatcttgacataggcttggagagaacccctgagcccagccaacctcctga 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ttcttcctaagatcttgacataggcttgaagagaacccctgagcccagccaacctcctga 500

                                                                       
Query: 301 ctgagctgggctctcagagcaatacctgacccccctgagggcctttcttccccagctcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgagctgggctctcagagcaatacctgacccccctgagggcctttcttccccagctcca 560

                                                                       
Query: 361 ctttgatggctggagtcacaattatgatttctggattgatgccgatcacccagacatcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgatggctggagtcacaattatgatttctggattgatgccgatcacccagacatcca 620

                                                                       
Query: 421 ccctgcaggctggtgctacaagacaggacatcccctggagcctcctctccgtgtgtaccc 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctgcaggctggtgctccaagacaggacatcccctggagcctcctctccgtgtgtaccc 680

                                                                       
Query: 481 cccggggcactcttctctttccctttctatcaatctctgacaaccccaccagggctccag 540
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccgggacactcttctctttccctttctatcaatctctgacaaccccaccagggctccag 740

                                               
Query: 541 tgcccacagtgaacctgggatgcctagccccctaag 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcccacagtgaacctgggatgcctagccccctaag 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no401_a17.g1 MSMg01no401_a17.g1 CHROMAT_FILE:
MSMg01no401_a17.g1 PHD_FILE: MSMg01no401_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:34 2005
         (494 letters)



>mm_chr2_162923094_162923987
          Length = 894

 Score =  540 bits (279), Expect = e-157
 Identities = 303/311 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagatcctgtaggagccgaacaccatggccagataaatgccatttaaaatggaccacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aagatcctgtaggagccgaacaccatggccagataaatgccatttaaaatggaccacaaa 252

                                                                       
Query: 61  gaagtagaaacctaccaggcactgaatagtaatttaaataacaagtatctattggcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 251 gaagtagaaacctaccaggcactgaatagtaatttaaataacaagtatctattggacact 192

                                                                       
Query: 121 tgtcccatgctgtagcaaaagttcctgatgaaagcaaaagagtttattttggctcaaaat 180
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 191 tgtcccacgctgtagcaaaagttcctgacgaaagcaaaagagtttattttggctcaaaat 132

                                                                       
Query: 181 tcgagggatgcgggctggcgagatggctcagcaggtaagagcactggctgctcttccaga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 131 tcgagggatgcgggctggcgagatggctcagcaggtaagagcactggctgctcttccaaa 72

                                                                       
Query: 241 ggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatccagaatgagatct 300
           ||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 71  ggtcctgagttcaaatcccagcaaccatatagtgggtcacaaccatccagaatgagatct 12

                      
Query: 301 gacgccctctt 311
           |||||||||||
Sbjct: 11  gacgccctctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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