TTTATAACTGCTGGXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTATATACCTTCGCATAAGCTTCTTTAAACTAAAAATTAATCAATGTA
AAATTAAATATTGCTCTGTCTTCTTTTCATCAATTAGTACTAAAGGTGTT
GTTTTTTCCCAAGGGTGAAGACGGTTATGCTTGACACGTGACTACTGCTT
CTCTTCCCTTTGCCTTGACGTAGCAATGTGAATAAAAGCTAGATTTTTTT
TCCAAAAGACTTATTTATTTATGTTAATGTTTGCCAAAGTGGCTTAGCAA
TAATATTAAAATATATCCCTTCTGTTTTTAATGAAAATTGAAAACATGCC
AGATTTTAAATTAGTGGTAACAGAGAAGCTGCTTTCTTGTTCTAAATACA
GAAAATAAAATGGCAAAAGGAAACAAGAAAAAAAGAAAAAAGAATCAGCT
TCGGGGTCACATTATAAACTCGACGACCTGTAAAGTATAAGTAAAAATCA
CTTTTAGTGGTGTTATTGAGAACATGTTCTAAGCAACTCAATTATGGGAA
CTGACTGATTCCTGAGCCAGTCAGTGGTCCTTTTCTGCTGACCCTGCTTG
TTTTTAGGACAATTACTTTTAAAGTCAGTTTAGACTAACATTTGTTATCT
ACCTTTAATAAAAAAGTCAATATTTTTCCAAGACAGGCCTTAAGGTTTTA
TGATAGTATCTTTTATTAGCCCGACTAGTAAGATTGATTACCTTTTTATA
AAAAAAGAAAGCCTTGATGATTTN

CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTGAGGAATACTGAATGGCTGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCTGGGAAATGCAAATCA
AAACAACCCTGAGTTTCTACCTCACACCAGTCAGATTGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGTAAACTTGTCCAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAATTTTGGACATAGTACTTACTACCGCAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCAGTAAGA
AGGACACATGCTCCATTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACAATCACAAAAGAACTCACATGATATGTACACACTGATAAGTG
GATATTAGCCCAGAAACTTAAAATACCCGAGATATAAAATATAATTTGCT
AAACACCTGGAAACTCCCGAAGAACGAAGACCCAAGTGGGGAAACCTTTG
CCCCTTCCTAAATTTGGGGAAAAAAACC

Query= MSMg01no401_e20.b1 MSMg01no401_e20.b1 CHROMAT_FILE:
MSMg01no401_e20.b1 PHD_FILE: MSMg01no401_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:53 2005
         (528 letters)



>mm_chr2_44863578_44864502
          Length = 925

 Score =  928 bits (480), Expect = 0.0
 Identities = 516/528 (97%), Gaps = 3/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagcttctttaaactaaaaattaatcaatgtaaaattaaatattgctctgtcttcttt 60
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 725 ataagcttctttaaactaaaaa-aaatcaatgtaaaattaaatattgctctgtcttcttt 667

                                                                       
Query: 61  tcatcaattagtactaaaggtgttgttttttcccaagggtgaagacggttatgcttgaca 120
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tcatcaactagtattaaaggtgttgttttttcccaagggtgaagacggttatgcttgaca 607

                                                                       
Query: 121 cgtgactactgcttctcttccctttgccttgacgtagcaatgtgaataaaagctagattt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 606 cgtgactactgcttctcttccctttgccttgacatagcaatgtgaataaaagctaga-tt 548

                                                                       
Query: 181 tttttccaaaagacttatttatttatgttaatgtttgccaaagtggcttagcaataatat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 547 tttttccaaaagacttacttatttatgttaatgtttgccaaagtggcttagtaataatat 488

                                                                       
Query: 241 taaaatatatcccttctgtttttaatgaaaattgaaaacatgccagattttaaattagtg 300
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 taaaatatatctcttcagtttttaatgaaaattgaaaacatgccagattttaaattagtg 428

                                                                       
Query: 301 gtaacagagaagctgctttcttgttctaaatacagaaaataaaatggcaaaaggaaacaa 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 427 gtaacagagaagctgctttcttgttctaaatacagaaaat-aaatggcaaaaggaaacaa 369

                                                                       
Query: 361 gaaaaaaagaaaaaagaatcagcttcggggtcacattataaactcgacgacctgtaaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 368 gaaaaaaagaaaaaagaatcagcttcggggtcacattataaactcgacggcctgtaaagt 309

                                                                       
Query: 421 ataagtaaaaatcacttttagtggtgttattgagaacatgttctaagcaactcaattatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ataagtaaaaatcacttttagtggtgttattgagaacatgttctaagcaactcaattatg 249

                                                           
Query: 481 ggaactgactgattcctgagccagtcagtggtccttttctgctgaccc 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggaactgactgattcctgagccagtcagtggtccttttctgctgaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 925
Length adjustment: 10
Effective length of query: 518
Effective length of database: 915
Effective search space:   473970
Effective search space used:   473970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)