Query= MSMg01no401_g04.b1 MSMg01no401_g04.b1 CHROMAT_FILE:
MSMg01no401_g04.b1 PHD_FILE: MSMg01no401_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:00 2005
(104 letters)
>mm_chr2_171474641_171475145
Length = 505
Score = 159 bits (82), Expect = 5e-44
Identities = 97/102 (95%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaatgttttgcttctgtcagc-atcaaaaggattctagctgagactggaaagat 62
|||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 305 ggaattcaatgtgatgtttctgtcagcaatcaaaaggattctagctgagactggaaagat 246
Query: 63 atgcagtggtgataagcgtctgctgtgctctcagaggccttg 104
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 245 atgcagtggtgataagcgtctgctgtgctttcagaggccttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 505
Length adjustment: 8
Effective length of query: 96
Effective length of database: 497
Effective search space: 47712
Effective search space used: 47712
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
| Query= MSMg01no401_g04.g1 MSMg01no401_g04.g1 CHROMAT_FILE:
MSMg01no401_g04.g1 PHD_FILE: MSMg01no401_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:00 2005
(537 letters)
>mm_chr2_171320379_171321315
Length = 937
Score = 907 bits (469), Expect = 0.0
Identities = 526/563 (93%), Gaps = 30/563 (5%)
Strand = Plus / Plus
Query: 1 attcctggcctcctcataagacaaaaagaatgtcatttctgtggaaatccaaattattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 attcctggcctcctcataagacaaaaagaatgtcatttctgtggaaatccaaattattca 238
Query: 61 cctgtaatactgggcttcttgtttccttcatccaaattgaattaaatgtgtgttaaatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cctgtaatactgggcttcttgtttccttcatccaaattgaattaaatgtgtgttaaatgc 298
Query: 121 acatttatcagcctcctgtgtaccagacactgtgacaggagtgggaaagtaaaagttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 acatttatcagcctcctgtgtaccagacactgtgacaggagtgggaaagtaaaagttaaa 358
Query: 181 tatccttacaagactattagcatacattaacagcacacagtcactatgataaatgtaata 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 359 catccttacaagactattagcatacattaatagcacacagtcactatgataaatgtaata 418
Query: 241 cgaatgttttcttttag----agcccatggtcatggtgccgattatggaggagggtgagg 296
||||||||| | || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 419 cgaatgtttcc----aggcagagcccatggtcatggtgacgattatggaggagggtgagg 474
Query: 297 gtgaacagggatgccgaggatgctaaacaggggcagagtgattgagaaaggggtgaggac 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 475 gtgaacagggatgccgaggatgctaaacaggggcagagtgatggagaaaggggtgaggac 534
Query: 357 tgggagaagcgcatccatgcaccagagtcacacggcatcagaccggcatcagacc----- 411
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 535 tgggagaagcgcatccatgcaccacagtcgcacggcatcagaccggcatcagaccggcat 594
Query: 412 -----------------ttctgtagctcgtactgatgatgcagagtgctgaactccatag 454
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cagaccggcatcagaccttctgtagctcgtactgatgatgcagagtgctgaactccatag 654
Query: 455 gcaatcaggccatggattcaaagttggcagtgtcttgccaatcccttatacatgtgtaag 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gcaatcaggccatggattcaaagttggcagtgtcttgccaatcccttatacatgtgtaag 714
Query: 515 caagtgggacagtgtgctcagcg 537
|||||||||||||||||||||||
Sbjct: 715 caagtgggacagtgtgctcagcg 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
