Query= MSMg01no401_h02.b1 MSMg01no401_h02.b1 CHROMAT_FILE:
MSMg01no401_h02.b1 PHD_FILE: MSMg01no401_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:04 2005
(522 letters)
>mm_chr2_72483995_72484916
Length = 922
Score = 853 bits (441), Expect = 0.0
Identities = 504/525 (96%), Gaps = 5/525 (0%)
Strand = Plus / Plus
Query: 1 tgacctagcaacctcatcagtgtatgtagcccaaggaaaggaagttagtttgctgaggag 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgacctagcaaccccatcagtgtatgtagcccaaggaaaggaagttagtttgctgaggag 259
Query: 61 atgggttcattctcatgttcactgaagcaatagacataattgtcacgacataaatttctg 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 260 atgggttcattctcatgttcactgaagcaatagacataattgtcaccacataaatttctg 319
Query: 121 acccaggtgtctgtaaactaatgggtcagtaatatctggttcatatactgctataacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acccaggtgtctgtaaactaatgggtcagtaatatctggttcatatactgctataacaaa 379
Query: 181 taatgaaatgccagtctcaatctga-tggaaccagaaattagattaagtgaatggagtag 239
|| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct: 380 gaacaaaatgccagtctcaatctgaatg-aaccagaaattagattaagtgaacggagtag 438
Query: 240 gctatgtatatttgagaagggaatctcacataggtgggatctaaagaaagttgatctcaa 299
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gctgtgtatatgtgagaagggaatctcacataggtgggatctaaagaaagttgatctcaa 498
Query: 300 gaggtaagattacagaggtggttcccagaagctggggaatgagaagga-taggga-tgtt 357
||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct: 499 gaggtaagattacagaggtggttcccagaagctggggaatgagaagggctagg-actgtt 557
Query: 358 ttcctcctggccttgggttgacagtgaagtcaccaagcccttattgagcaatgtctgcag 417
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct: 558 ttcctcctggccttgggttgacagtggagtcaccacgcccttattgagcaatgtctgcgg 617
Query: 418 gctgtcctagataagaagatgagggcacagcccttttccccagtgaccttatagtctaat 477
||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 618 gctgtcctagagaagaagattagggcacaaccctttttcccagtgaccttatagtctaat 677
Query: 478 gagaaagattagacactagtcaagtaagcatgatgtgaggcagaa 522
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gagaaagattagacactagtcaagtaagcatgatgtgaggcagaa 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_h02.g1 MSMg01no401_h02.g1 CHROMAT_FILE:
MSMg01no401_h02.g1 PHD_FILE: MSMg01no401_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:04 2005
(521 letters)
>mm_chr2_72671265_72672187
Length = 923
Score = 851 bits (440), Expect = 0.0
Identities = 493/523 (94%), Gaps = 22/523 (4%)
Strand = Plus / Minus
Query: 1 atgaagcggngccttctccatgggcgatttctcggagctgaagcaccggaattgcatgct 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atgaagcggtgccttctccatgggcgatttctcggagctgaagcaccggaattgcatgct 456
Query: 61 ggctgtggcaggcttccccgccgcagttagcacactttaaagaacgggtattgagtttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggctgtggcaggcttccccgccgcagttagcacactttaaagaacgggtattgagtttta 396
Query: 121 gctgattctgccaccatcgttttcaactctacagacagctgttaagccataaaatatttt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 395 gctgattctgccaccatcgttttcaactctacagacagctgttaaaccataaaatatttt 336
Query: 181 gagatataaagctcttgccttgggagatcccccg--ccccccatgtcatcgtctatgaaa 238
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 335 gagatataaagctcttgccttgggagatcccccgccccccccacgtcatcgtctatgaaa 276
Query: 239 tattgtttttacgaattgattactttaaaaatggaaagatacttagtagataacttcaag 298
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tattgtatgaacgaattgattactttaaaaatggaaagatacttagtagataacttcaag 216
Query: 299 ttggtatttagccttcaaacaaacaaacaaacaaacaaacaaacaaactaacaaaacaaa 358
||||||||||||||| | ||||||||||||| |||||||||||
Sbjct: 215 ttggtatttagcctt---------------a-aaacaaacaaaca----aacaaaacaaa 176
Query: 359 aaagaatggtaataaaagggggatttgatatttaaggaacacttgcataaattaaccatg 418
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 175 aaagaatggtaataaaagggggatttgatatttaaggaacatttgcataaattaaccatg 116
Query: 419 tagcccataggtagagtgatttgaatctgaggaaggaggattgatataacacagattgtt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 115 tagcccataggtagagtgatttgaatctgaggaaggaggattgatataacacagattatt 56
Query: 479 tgatgagagcatcctgatagaattctaatgtaactcaagtaat 521
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 tgatgagagcatcctgatagaattctaatgtaactcaagtaat 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 923
Length adjustment: 10
Effective length of query: 511
Effective length of database: 913
Effective search space: 466543
Effective search space used: 466543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
