Query= MSMg01no401_h05.b1 MSMg01no401_h05.b1 CHROMAT_FILE:
MSMg01no401_h05.b1 PHD_FILE: MSMg01no401_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:05 2005
(510 letters)
>mm_chr2_77049058_77049967
Length = 910
Score = 963 bits (498), Expect = 0.0
Identities = 507/510 (99%)
Strand = Plus / Plus
Query: 1 caaatctactcccttattatgctattctcttaccaccccaaaaatgccagcctcctgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatctactcccttattatgctattctcttaccaccccaaaaatgccagcctcctgcaa 260
Query: 61 accttctgtgtggtaaaatctgccatgtttctagaaaatggagtcaactgctacttcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accttctgtgtggtaaaatctgccatgtttctagaaaatggagtcaactgctacttcctc 320
Query: 121 ccaccaggccttgccgactctggcaatcacagaaacaatcggacgagaaacgcccaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaccaggccttgccgactctggcaatcacagaaacaatcggacgagaaacgcccaaagc 380
Query: 181 actgtggttctatccttgtgatagttaacgctttttctccttacctctatcagcaaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtggttctatccttgtgatagttaacgctttttctccttacctctatcagcaaacaa 440
Query: 241 aactgaatctatttttataacctgtatacaatttagcaccatgcctaaatatctaccaag 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactgaatctacttttataacctgtatacaatttagcaccatgcctaaatatctaccaag 500
Query: 301 agaaccaatgactcaagatttttaaagaacacttcagtatttcaagctgcttatactcgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 agaaccaatgactcaagatttttaaagaacacttcagtatttcaagctgcttatacttgt 560
Query: 361 ttttagaggtttcatttttagttatgtgtacatgtatgtctggggatgagtgtatacata 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 ttttagaggtttcatttttagttatgtgtacatgtgtgtctggggatgagtgtatacata 620
Query: 421 taagcacaggtactatggatgacagaaaagcatatagcaccagatcccctggagctggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagcacaggtactatggatgacagaaaagcatatagcaccagatcccctggagctggag 680
Query: 481 tgacaggtaactgggagcccttgaagtggg 510
||||||||||||||||||||||||||||||
Sbjct: 681 tgacaggtaactgggagcccttgaagtggg 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_h05.g1 MSMg01no401_h05.g1 CHROMAT_FILE:
MSMg01no401_h05.g1 PHD_FILE: MSMg01no401_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:05 2005
(489 letters)
>mm_chr2_77152780_77153669
Length = 890
Score = 886 bits (458), Expect = 0.0
Identities = 482/490 (98%), Gaps = 1/490 (0%)
Strand = Plus / Minus
Query: 1 cattacaaagttgctaattcactccgtttgtaaaaccgtagcattttaaacctgagaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 cattacaaagttgctaattcactccgtttgtaaaaccgtagcattttaaacctgagaaag 774
Query: 61 atctgaaaagaaccccactttagccaattctcggactttacaatgagaaaattgagtggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 atctgaaaagaaccccactttagccaattctcggactttacaatgagaaaattgagtggt 714
Query: 121 ttgcccaaggtcatccaattagtgggaagtctaacgaaaggcaagacctagttgtgataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttgcccaaggtcatccaattagtgggaagtctaacgaaaggcaagacctagttgtgataa 654
Query: 181 cagtcctatcgtgttctcataaaccctgcacagcaggccacttaggg-ttttttttttta 239
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 653 cagtcctatcatgttctcataaaccctgcacagcaggccacttagggtttttttttttta 594
Query: 240 agcacatatttggagaacatgaaaggtcttcctttactaacccttcaccaagctctcctc 299
|||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 593 agcacataaaaggaaaacatgaaaggtcttcctttgctaacccttcaccaagctctcctc 534
Query: 300 tcagagatgacagcttctgttgcttttccctttgggagtaaacgtgcactatccaactaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tcagagatgacagcttctgttgcttttccctttgggagtaaacgtgcactatccaactaa 474
Query: 360 gttccacgctcgactacttccctatcaaccttagtcaggactcagtaagcactgaccatg 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 473 gttccacgctcgactacttccctatcaaccttagtcaggactcagtaatcactgaccatg 414
Query: 420 tgctggccttgcacaatctgagtctgccttcaaagtgctcagttggtgaaggacatagca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgctggccttgcacaatctgagtctgccttcaaagtgctcagttggtgaaggacatagca 354
Query: 480 gagtctgtga 489
||||||||||
Sbjct: 353 gagtctgtga 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space: 421520
Effective search space used: 421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
