BAC Information

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BAC

Clone NameMSMg01-401H22
Chromosome2 (Build37)
Map Location 160,294,804 - 160,295,369
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043689, Gm826, Mafb
Downstream geneLOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401H22.T7 (MSMg01no401_h22.b1)MSMg01-401H22.TJ (MSMg01no401_h22.g1)
ACCAG500867AG500868
length763756
length of high quality
(start - end)
536 (74 - 609)573 (61 - 633)
definitionCHROMAT_FILE: MSMg01no401_h22.b1 PHD_FILE: MSMg01no401_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:08 2005CHROMAT_FILE: MSMg01no401_h22.g1 PHD_FILE: MSMg01no401_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCACAATTTGGGGGCGCTATACGACTCCTATATTCAGAAATCCGCGGAA
TTCAATAACTCTCTCAAAGAATACAGGAGAACACTGCTAAAGAGTTACAA
GTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAA
AGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAAC
AGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGAC
CTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCT
GGAGATAGAAACCCTAGGAAAGATTTCTGGAACCATAGATGCCAGCATCA
GCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCC
ATAGAGAACATCAGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGAT
CCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACC
TACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCA
GCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAA
AGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACCTG
GACAGAACAGAAATTCCTCCCGACACATAATAATCAGAACACCAATGCNC
TCAATAAAGATAGATACTTATAGCCGTAAGGGAAAAAGGTTCAGTATCAT
ATTTAGGGTAAGC
TCGATGATGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCGAAATTCTCTGGAGGCAGGCTCTCTCTCTAAATCC
CAATGCACCTATTTCTTATAAGCCCTGTGAAACTGTCCTAGATGCTCCCA
GAAAAGACCCCTCTTCTTTTTCCAGGGCCCAGCCATATGTGGATATGGAC
CCTTAGTCTCTAGAACATTCTAGCCCCTGATGTAATTCACCTATGGGCCC
AAATCTGGAAGGAACTATGAGAGCTTTGAATGACAAGGACACTGGGTCTC
AGGCCTGACTGGAAAGAGTTTTCCTTGGGCAGGTGAGAATCCCATTCCAG
TGAGTGTTGTGTGAAGGAGCTGTCTGGTCACTCTGGAAGCAGGATATCAT
TTCACCAATGCTAGACGAGGTGAGTCCTTGGCTGCCCGACAGGGCATAAT
GGCTCTTGCTTCGTGTATGGTGATAAAGGCAGAGAGAAATTAAGCCTGGG
CAGATCTGTGTCTCCTGTAGCAGCCACAGTTGCTGAATCTGCCATTTTTG
AGAAAGTGAAATTCCAGTCCCCTGACTTCCCGTGGCTAGGCTATCAGGAC
ATGCTGAGGGGTGTCAGCTGACCTCTCTGGCTTCTTGGTAGAAAATGGAA
TTCTGTGTTTATCCCTGTCTATGCCACTGGAACCAATCTGTGCTGGATGC
CCTTGAATTTTGCGGTGTAGTAAGCTAGGGTATTTATTTATGTCCCGCTT
TTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_h22.g1 MSMg01no401_h22.g1 CHROMAT_FILE:
MSMg01no401_h22.g1 PHD_FILE: MSMg01no401_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:08 2005
         (573 letters)



>mm_chr2_160294597_160295569
          Length = 973

 Score = 1040 bits (538), Expect = 0.0
 Identities = 559/566 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   aattctctggaggcaggctctctctctaaatcccaatgcacctatttcttataagccctg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aattctctggaggcaggctctctctctaaatcccaatgcacctatttcttataagccctg 714

                                                                       
Query: 68  tgaaactgtcctagatgctcccagaaaagacccctcttctttttccagggcccagccata 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tgaaactgtcctagatgctcccagaaaagacccctcttctttttccagggcccagccata 654

                                                                       
Query: 128 tgtggatatggacccttagtctctagaacattctagcccctgatgtaattcacctatggg 187
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 653 tgtggatatggacccgtagtctctagaacattctagcccctgatgtaattcaccgatggg 594

                                                                       
Query: 188 cccaaatctggaaggaactatgagagctttgaatgacaaggacactgggtctcaggcctg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cccaaatctggaaggaactatgagagctttgaatgacaaggacactgggtctcaggcctg 534

                                                                       
Query: 248 actggaaagagttttccttgggcaggtgagaatcccattccagtgagtgttgtgtgaagg 307
           ||||||||||| || ||  ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 533 actggaaagagcttccccagggcaggtgagaatcccattccagtgagtgttgtgggaagg 474

                                                                       
Query: 308 agctgtctggtcactctggaagcaggatatcatttcaccaatgctagacgaggtgagtcc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agctgtctggtcactctggaagcaggatatcatttcaccaatgctagacgaggtgagtcc 414

                                                                       
Query: 368 ttggctgcccgacagggcataatggctcttgcttcgtgtatggtgataaaggcagagaga 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttggctgcccgacagggcataatggctcttgcttcgtgtatggtgataaaggcagagaga 354

                                                                       
Query: 428 aattaagcctgggcagatctgtgtctcctgtagcagccacagttgctgaatctgccattt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aattaagcctgggcagatctgtgtctcctgtagcagccacagttgctgaatctgccattt 294

                                                                       
Query: 488 ttgagaaagtgaaattccagtcccctgacttcccgtggctaggctatcaggacatgctga 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttgagaaagtgaaattccagtcccctgacttcccgtggctaggctatcaggacatgctga 234

                                     
Query: 548 ggggtgtcagctgacctctctggctt 573
           ||||||||||||||||||||||||||
Sbjct: 233 ggggtgtcagctgacctctctggctt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)