BAC Information

Click to search

BAC

Clone NameMSMg01-401K18
Chromosome2 (Build37)
Map Location 27,451,481 - 27,641,108
singlet/doubletdoublet
Overlap geneRxra
Upstream geneAgpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5
Downstream geneCol5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401K18.T7 (MSMg01no401_k18.b1)MSMg01-401K18.TJ (MSMg01no401_k18.g1)
ACCAG501001AG501002
length772773
length of high quality
(start - end)
142 (324 - 465)495 (75 - 569)
definitionCHROMAT_FILE: MSMg01no401_k18.b1 PHD_FILE: MSMg01no401_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:21 2005CHROMAT_FILE: MSMg01no401_k18.g1 PHD_FILE: MSMg01no401_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,451,481 - 27,451,622)(27,640,614 - 27,641,108)
sequence
CAATATTTGCGGTGCTAAACGACTCACTATTTCTAAATAGCGCGGAATTN
AAGAATTTACAAAAGAGAACTCCATGTGGCAGGGAGGGGGGGACTTTAGG
GAAAGAGTGGTTACACCTAAAGATGAGTCATGCTTCCAACAAAGAAATTT
TAAAAGGAAATAACAGGTTTTTCTGAGAGATTCAGAAAAGTGGGTAGTCT
TACAAAGATGCATGGCTGTGACCCTGCAAGCCACCATGCTCCAGGGTGGT
ACTCGGAGAAGGCAAAGTACAGCCTCTCATTTAAGGGATAATTATTCTGC
CTAGCTCTGTAACACTGTTTATTGGAGACTGACTTCCTAGGGTGGTCCCT
TAGCCAGCTCAATCCAGAACATTAGGTCTCCACCCAGGACAGAGGTTCCA
TCTTCTTGACCACATGAAATGGTCCATTTCCTTAACAGGCATTTACTGCT
GCTGTGTCCCTGGGGTCTCTGGGAGACCCTAGCCTAATCTGGTGTGGGAC
ATACCTGTCTTTCTGGTTTTGGGAGGCAGAGGATCCCTCCTATGTGGACC
TTTGGAAAGCAGGGATAGGACACGGTTTTCCCTGCTTTGCTGACCGACTA
TATCATACTTCTGTCCTTCCTCATTCTCTATCTGTGAATTCAAGGGCCTG
GTTTTTGTTTTCTTTAGCCGGGACCCAGTTCCCTTTTGTCCCTCTCTTTC
TCTCCTCCTTGTCTCAAGTCCAGCCCTCCTTGTACTCTCTCAATTCTTGG
CCCCCCTGCCCTCCCTTACTTT
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAGTACTCTGACTACAGACAATCCG
CCCAAGTCACCCCAGTTCCAACCCAGAGCAGACCCACACACAGGCTGGTT
TGGGGAACAGCAGAGTAGGCGAACTGCCTGTCAAGGTTGGAGTCCAGTGG
AGGACCATGGGAAAAGATGTAACAGGTTGGACCCTCTGCCAACCGACTTC
CGGCCGGTGTTGGGTATTCATGCAGTCACAGCCTCCCAGGAACTGTCCAG
AAAGATGGAAAGCCACCCAGGATTATGTTAGAAGGCTCCTTGCAAACCTG
TGGCAATTCCAGACAGCCCTTCGCCTCTGCTCGTTGGATGTCCTAAGAGG
ACAGGCAGGGTCCTCTGTGTCTGACCTACCACTTGGCTTTCCTTCCTGTC
ACTCTGGACACCTCCCTGTACTCCTGAAATAAAAGGAAGATGTGCATATG
TGTCCCTGGTCCACAAAAACCTGTTCTCCTCCAACAGCAGAGTTTTTCTC
TCCCTGTTAAAATGACAGATAGGGCTGGTTCTAACCTCCTCACCTGACAA
GAAACAAGCCTGCCAGGCACAGGATATGGCCAGGAGGTGTCCTTGAACAA
GTTGATCTGCCCAGGATGTGGGAATAGTCTTCGCCCAATCTTGTTTGAAC
CCTGAAGAAAAACATTTTAATATACCCCGACTCCGGGAATCCCTCTTCCC
CACCCCAAAAAGGGTTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_k18.b1 MSMg01no401_k18.b1 CHROMAT_FILE:
MSMg01no401_k18.b1 PHD_FILE: MSMg01no401_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:21 2005
         (142 letters)



>mm_chr2_27451281_27451822
          Length = 542

 Score =  236 bits (122), Expect = 4e-67
 Identities = 137/142 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagactgacttcctagggtggtcccttagccagctcaatccagaacattaggtctccac 60
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 201 ggagactgacttcctagggtggtcccttagccagatcaatccagaatattaggtctccac 260

                                                                       
Query: 61  ccaggacagaggttccatcttcttgaccacatgaaatggtccatttccttaacaggcatt 120
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggacagagatcccatcttcttgaccacatgaaatggtccatttccttaacaggcatt 320

                                 
Query: 121 tactgctgctgtgtccctgggg 142
           ||||| ||||||||||||||||
Sbjct: 321 tactgttgctgtgtccctgggg 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no401_k18.g1 MSMg01no401_k18.g1 CHROMAT_FILE:
MSMg01no401_k18.g1 PHD_FILE: MSMg01no401_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:21 2005
         (495 letters)



>mm_chr2_27640414_27641308
          Length = 895

 Score =  888 bits (459), Expect = 0.0
 Identities = 486/495 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtactctgactacagacaatccgcccaagtcaccccagttccaacccagagcagacc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 695 taagtactctgactacagacaatccgccaaagtcaccccagttccaacccagagcagacc 636

                                                                       
Query: 61  cacacacaggctggtttggggaacagcagagtaggcgaactgcctgtcaaggttggagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cacacacaggctggtttggggaacagcagagtaggcgaactgcctgtcaaggttggagtc 576

                                                                       
Query: 121 cagtggaggaccatgggaaaagatgtaacaggttggaccctctgccaaccgacttccggc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cagtggaggaccatgggaaaaaatgtaacaggttggaccctctgccaaccgacttccggc 516

                                                                       
Query: 181 cggtgttgggtattcatgcagtcacagcctcccaggaactgtccagaaagatggaaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 515 cggtgttgggtattcatgcagtcacagcctcccaggaactgtccagaaagacggaaagcc 456

                                                                       
Query: 241 acccaggattatgttagaaggctccttgcaaacctgtggcaattccagacagcccttcgc 300
           ||||||||  | |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 acccaggagaaggggagaaggctccttgcaaacctgtggcaattccagacagcccttcgc 396

                                                                       
Query: 301 ctctgctcgttggatgtcctaagaggacaggcagggtcctctgtgtctgacctaccactt 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 395 ctctgctcgttggatgtcctaagaggacgggcagggtcctctgtgtctgacctaccactt 336

                                                                       
Query: 361 ggctttccttcctgtcactctggacacctccctgtactcctgaaataaaaggaagatgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggctttccttcctgtcactctggacacctccctgtactcctgaaataaaaggaagatgtg 276

                                                                       
Query: 421 catatgtgtccctggtccacaaaaacctgttctcctccaacagcagagtttttctctccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 catatgtgtccctggtccacaaaaacctgttctcctccaacagcagagtttttctctccc 216

                          
Query: 481 tgttaaaatgacaga 495
           |||||||||||||||
Sbjct: 215 tgttaaaatgacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)