BAC Information

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BAC

Clone NameMSMg01-401N23
Chromosome2 (Build37)
Map Location 66,044,172 - 66,044,524
singlet/doubletsinglet
Overlap geneTtc21b
Upstream geneCobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik, Galnt3, LOC620893
Downstream geneScn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540, Gm1322
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401N23.T7 (MSMg01no401_n23.b1)MSMg01-401N23.TJ (MSMg01no401_n23.g1)
ACCAG501154AG501155
length779761
length of high quality
(start - end)
232 (78 - 309)498 (74 - 571)
definitionCHROMAT_FILE: MSMg01no401_n23.b1 PHD_FILE: MSMg01no401_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:36 2005CHROMAT_FILE: MSMg01no401_n23.g1 PHD_FILE: MSMg01no401_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAAAATTTGCGGCGCTAAACGACTCACATTTTCGTATCTGCGGGAATTA
CTCTCGTTTCGAGACAAGGCTTGNTTATAGTTAGGCACAGCGGAGGCCCG
CGCCATCTTATAATGCCGATTGCTCTCAGCACACACGGCTCTCCTCAGAG
ATTACTGGCGGCATGCACGCGATTGCTCGCAGCATGTACCGGCTCTCCAC
ACCTAGAGACACAAGCTCTGGGGGGGGGGGGGTAACTAGTTAGTTCTTAT
TGTTCCTCCTATAGGGTTGCAGACTCCTTCAGCTCCTTGGGTACTTTCTC
CAGCTCCTTCTTTGGTGACTTTGCGNNCCATCCAAAAGCTGACTGGGTGC
ATTCTCTTCTCCCCCTGCCAGGCACTGGCATAGCCTCACAGGAGACAGAT
ATATCAGGGCCCTGTCAGTTAAATCTTGTTGGCATATGCAATAGTGCCTT
GGTTCGTTGGTCGCTTATGGCACGGACCCCCAGGTGCAACACTTTCCGGA
TGTTCGGTCCGTCCGTGTCTGCTCCATATTTCGCCTCCGTCACTCTCTCC
TGTGGTATCTTCCCCCTGCTTAGAATTTTTGATGCCCCTCCTCCTTTGTG
CCGCTCGTTCCCCTTTTCTACCTTTCATTAACTTTTCCGCGCCCCCGGCG
GANAACGTTTTTTTTTTTGTTTGTGGCCCTGGCTGACCCGATGTCTCTAA
TCTTAATTCGCCTCTTCGCCTTGCGTTTTATTGCGCTGTTTTCGCCTTGT
TGTGCCCTCTTTTCCCCCTTTTTTCCCTT
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCATTCTCATTCTACTAACCTCTTCT
GCCCTTCCCCGTCTCCCTAATACCCTTCCTCTCCAGACAGCACCATTTTT
ACTTTCATGATTTTTAAAACATGAGTTTCAATGCTTGTGTGTGTCAGAAA
AAATGGGGAACGGTGGTGGAGGGGACGTTGTGGATACCAGAGGACAACAC
TGAGCATTAGTCTCAATAAGCTGCCCATCTCTTTAAGACGCGGTGTTTCA
CTGGGCGGGAATTCATGGATCATGTTAACATGACAGGCCGGCAGGGCTAG
GCATCCTCCTGTCTGTCTCCCTAGCACTGGGCTTGTGGGCTTATGCCATC
ACCTGTTACAATTTTACATGGGTTTTTGAGCTGTGAGACAACACTCTGTA
CCCTACTTATGTGTCTTTTTTAAAATCTATTCATAATTTCAATGTAAGAA
CATTGTGCTTCAGCGGTACTGAAAGACTTGAATCCACACCCCCGAGGCTT
GGTGCAGATTTTCTTCCAATCTTGCCTGTAACATATTTTGTCTTCCTTCT
TTCTCACCATGTATTCTAAAATATACTACCCTTGAGGGCGCATTGAGGAC
CTTGCTTTCTGTTTGGCCCAGCACTACAAATGTCTTAGATCCCCAAAGGT
CCCTGCCTAAGAATTTTCCACCTGAAAGCGCCATGACTTGATCCCTCTAA
CCCCCAAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_n23.g1 MSMg01no401_n23.g1 CHROMAT_FILE:
MSMg01no401_n23.g1 PHD_FILE: MSMg01no401_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:36 2005
         (498 letters)



>mm_chr2_66044170_66045067
          Length = 898

 Score =  629 bits (325), Expect = 0.0
 Identities = 346/353 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcattctcattctactaacctcttctgcccttccccgtctccctaatacccttcctctc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 355 atcattctcattctactaacctcttctgcccttccccatctccctaacaccctgcctctc 296

                                                                       
Query: 61  cagacagcaccatttttactttcatgatttttaaaacatgagtttcaatgcttgtgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cagacagcaccatttttactttcatgatttttaaaacatgagtttcaatgcttgtgtgtg 236

                                                                       
Query: 121 tcagaaaaaatggggaacggtggtggaggggacgttgtggataccagaggacaacactga 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tcagaaaaaatggggatcggtggtggaggggacgttgtggataccagaggacaacactga 176

                                                                       
Query: 181 gcattagtctcaataagctgcccatctctttaagacgcggtgtttcactgggcgggaatt 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 175 gcattagtctcaataagctgcccatctctttaagacgcgttgtttcactgggcgggaatt 116

                                                                       
Query: 241 catggatcatgttaacatgacaggccggcagggctaggcatcctcctgtctgtctcccta 300
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 catggatcaggctaacatgacaggccggcagggctaggcatcctcctgtctgtctcccta 56

                                                                
Query: 301 gcactgggcttgtgggcttatgccatcacctgttacaattttacatgggtttt 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  gcactgggcttgtgggcttatgccatcacctgttacaattttacatgggtttt 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)