BAC Information

Click to search

BAC

Clone NameMSMg01-402C07
Chromosome2 (Build37)
Map Location 15,609,201 - 15,609,667
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb2, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
Downstream geneLOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402C07.T7 (MSMg01no402_c07.b1)MSMg01-402C07.TJ (MSMg01no402_c07.g1)
ACCAG501360AG501361
length756757
length of high quality
(start - end)
482 (41 - 522)411 (73 - 483)
definitionCHROMAT_FILE: MSMg01no402_c07.b1 PHD_FILE: MSMg01no402_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:56 2005CHROMAT_FILE: MSMg01no402_c07.g1 PHD_FILE: MSMg01no402_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:57 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAAGAATCCGCGGAATTC
ACTTTTTTTCCTTTATACTTATTCCTTTCATCTACTCAAATGGGATCATT
CAAACCTTCAAAGCAGTTCTAAGACACTGAAAGCAAAGCAAGACAGGGTC
TATGTCTGGATACTTACCATCAAAAGTCTTCTTGGATTCTGTAACAGTTT
CTGTAATTTCTGTAATTTCTTACTCAGAAATGTTGGCAATGCTGACAGTG
ATGAACCTAACCTAAAGCCATTGTAGAATTATTAGCTTTTTTTCTTCTTT
TTTCTTTTCTTTTTTATTTTGTCTCTGGAAACTTTATTGGCCTAGTTTAG
CTTTCTAAGATTATCTTTATAAAATAACATGCAAAACCATGAAATTAATC
ACTCTAGTTACATGCATAGATTATATTTAGATATACTACTCTAGATTTAC
ATTTTCTATCATAGGAAAAAAATACTTTAAATTTCTTTAAAATATGTATG
GCAAATGATCTGATTATAAGCATTACATAAGGTCTTAATAAATTTCCCAA
ATAAAATATTGTAAAGACAACTTTATCAAAACCCAGCACCAAAACCTATA
TTTGATAGATCGACATATAATTTTTAAATCCAATAAAATTCTACCTAATA
ATTTTCTTAAACTGGAAATTATAACTAATTATTCTCATACTTACTTGTCC
CTCTCTTGATATCACTACTTGGGAACTGCCTTCTCCCTGAATATGTTTAT
ATTTTG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAAAATGTCTAAGATCAA
AAATTCAGGTGACAGCACATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTGCTCAGAATATTGGACATAGTACTACAGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ATACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGCG
GTACATCTACACAATGTAGTATTACTCATCTATTAACATGAATGAATTTA
TGATATTCCTAGCTCAATGGATGTACATGGAGGGCATCATTTTGAGTGAG
GTATCATTTTCACCAAGGAACTCTCACCTATAGTACTCACTGAAAAGTGG
ACATTATTCCCATACCTACGATACCCAAGTACATATGATACCTTTTCCTA
AACACTTTGATACTTCCCATAAATGAATACTGAAGTGTGGACCTTATGCT
CCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_c07.b1 MSMg01no402_c07.b1 CHROMAT_FILE:
MSMg01no402_c07.b1 PHD_FILE: MSMg01no402_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:56 2005
         (482 letters)



>mm_chr2_15608986_15609867
          Length = 882

 Score =  816 bits (422), Expect = 0.0
 Identities = 454/468 (97%), Gaps = 8/468 (1%)
 Strand = Plus / Plus

                                                                       
Query: 22  tttatacttattcctttcatctactcaaatgggatcattcaaaccttcaaagcagttcta 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tttatacttattcctttcatctactcaaatgggatcattcaaaccttcaaagcagttcta 275

                                                                       
Query: 82  agacactgaaagcaaagcaagacagggtctatgtctggatacttaccatcaaaagtcttc 141
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 276 agacactgaaagcaaagcaagacagggtctatgtctggatatttaccatcaaaagtcttc 335

                                                                       
Query: 142 ttggattctgtaacagtttctgtaatttctgtaatttcttactcagaaatgttggcaatg 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttggattctgtaacagtttctgtaatttctgtaatttcttactcagaaatgttggcaatg 395

                                                                       
Query: 202 ctgacagtgatgaacctaacctaaagccattgtagaattattagctttttttcttctttt 261
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 396 ctgacagtgatgaacctaacctaaagccattgtagaattattagcttttttt-ttctttt 454

                                                                       
Query: 262 t-----tcttttcttttttatttt--gtctctggaaactttattggcctagtttagcttt 314
           |     |||||| |||||| ||||  |||||||||||||||||||||||| ||||| |||
Sbjct: 455 tctttttcttttttttttttttttttgtctctggaaactttattggcctattttagtttt 514

                                                                       
Query: 315 ctaagattatctttataaaataacatgcaaaaccatgaaattaatcactctagttacatg 374
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 515 ctaagattatctttataaaataacatgcaaaacaatgaaattaatcactctagttacatg 574

                                                                       
Query: 375 catagattatatttagatatactactctagatttacattttctatcataggaaaaaaata 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 catagattatatttagatatactactctagatttacattttctatcataggaaaaaaata 634

                                                           
Query: 435 ctttaaatttctttaaaatatgtatggcaaatgatctgattataagca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctttaaatttctttaaaatatgtatggcaaatgatctgattataagca 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)