Query= MSMg01no402_f07.b1 MSMg01no402_f07.b1 CHROMAT_FILE:
MSMg01no402_f07.b1 PHD_FILE: MSMg01no402_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:11 2005
(229 letters)
>mm_chr2_11656303_11656931
Length = 629
Score = 400 bits (207), Expect = e-116
Identities = 224/231 (96%), Gaps = 5/231 (2%)
Strand = Plus / Plus
Query: 1 ttttgtttttttgttttttg-ttttttg-ttttttttatctaacagccagaatctgccta 58
|||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 202 ttttgttttt---ttttttgtttttttgtttttttttatctaacagccagaatctgccta 258
Query: 59 tagcctaggttgaattcatttctgaatatcatactgccttctggagtttggagaattgga 118
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tagcccaggttgaattcatttctgaatatcatactgccttctggagtttggagaattgga 318
Query: 119 ctttcttttgaacatgacactggaacctgcacattgttggagtacctcattgtcctctaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctttcttttgaacatgacactggaacctgcacattgttggagtacctcattgtcctctaa 378
Query: 179 tataaaagccagctgctccctagtctatggcacatagagtaggtctatcag 229
||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 379 tataaaagccagctgctccctggtctatggcacatagagtaggtctatcag 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no402_f07.g1 MSMg01no402_f07.g1 CHROMAT_FILE:
MSMg01no402_f07.g1 PHD_FILE: MSMg01no402_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:11 2005
(408 letters)
>mm_chr2_11832691_11833499
Length = 809
Score = 690 bits (357), Expect = 0.0
Identities = 404/439 (92%), Gaps = 31/439 (7%)
Strand = Plus / Minus
Query: 1 caggggctataaaaacatgaaatttacaaactgcattcgtcttttctatatatgtcctac 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 463 caggggctataaaaacatgaaatttacaaactgcatttgtcttttctatatatgtcctac 404
Query: 61 caattccagtccacataaattagaaaacacttaaacttctcatgtgtcttcagtgaagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 caattccagtccacataaattagaaaacacttaaacttctcatgtgtcttcagtgaagtg 344
Query: 121 gaaatagttggaggagaaccagagtccttcttc-ttttttttagcctatgtttctccagt 179
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 343 gaaatagttggaggagaaccagagtccttcttctttttttttagcctatgtttctccagt 284
Query: 180 ggttttcacactaaaatgctcaatctacacaacctattaatgcacacgttattgaaataa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ggttttcacactaaaatgctcaatctacacaacctattaatgcacacgttattgaaataa 224
Query: 240 agataggttcaatgaccaatagggtgtgtgtgtgtgtgtgt------------------- 280
||||||| |||||||||||||||||||||||||||||||||
Sbjct: 223 agataggctcaatgaccaatagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 164
Query: 281 -----------gcgcgcacccatgtgtctatgtgtgcatttgtgtgcaagagtgtgtttg 329
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tgtgtgtgtgcgcgcgcacccatgtgtctatgtgtgcatttgtgtgcaagagtgtgtttg 104
Query: 330 catgtgtgggggtgcgcatgattgagtgtctccatgcatgcaaatgtgtgtgtgtgcatg 389
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 catgtgtgggggtgcacctgattgagtgtctccatgcatgcaaatgtgtgtgtgtgcatg 44
Query: 390 tgtgcgtgcgtgcttgtgt 408
|||||||||||||||||||
Sbjct: 43 tgtgcgtgcgtgcttgtgt 25
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space: 319200
Effective search space used: 319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
