BAC Information

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BAC

Clone NameMSMg01-402I08
Chromosome2 (Build37)
Map Location 22,258,194 - 22,258,379
singlet/doubletsinglet
Overlap geneMyo3a
Upstream geneGpr158, LOC637235
Downstream geneLOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402I08.T7 (MSMg01no402_i08.b1)MSMg01-402I08.TJ (MSMg01no402_i08.g1)
ACCAG501648AG501649
length795781
length of high quality
(start - end)
59 (256 - 314)188 (73 - 260)
definitionCHROMAT_FILE: MSMg01no402_i08.b1 PHD_FILE: MSMg01no402_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:26 2005CHROMAT_FILE: MSMg01no402_i08.g1 PHD_FILE: MSMg01no402_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGGNATGACTTGTACCCTATTTTTTAATAGGGTTATTTGTTTCT
CTGGAGTCTAATTTTTGAGTTCTTTGTTACATATTGGGCCTCTATCAGAT
ATAGGGTTGGTGAAGATATTTTCCATAACTGTTAGTGGCCTTTTTGTCTT
ATTGACAGTGCCTTTGCCTTACAGAAGCTTTGTCATTTATGAGGTCCCAT
TTGTCGATTCCCGATCTTACATCACACTCCATTGCTGTTCTGTTCAGGAA
TTTCCCCCCTGTGCTTATATTTTCGAGGGTCTTCCCAACTTTCTCTTTTA
TAAGTTTTAGTGACTCGGGCTCCATGCGAAGGTCCTTGATCCACTTGGAC
ATGACCTTTGTATTAGGAAATAACAATGGTTCGATCTGTCTTTTACATGC
TACCCGCCTGCTGAGTCCACACCATTTGTTGAAAATGCTATCTTCTTTCC
CCCGGACCAGTTTTATTTCCTTTGTTTTAGATCCACGTGACCACATGGCG
TGTATTTTTCAGTTTCTGGTAACTTTCCATTCCTTTTCCATTCGACTTTT
CCTCGTCTTGTTTTTGTTTCTAGTTTCTCTTAATGTTTTTTATCCCCCTT
CGGTTCCCTCTATTTCTCTTTTATTCCCCCTTTTCTTTTCTTTATACTCC
CTCGGACTCTGCTGCACGACATAACTTATTCTGCCTTTATTCTTCACCCT
CTTTTTTCTTTTATAACCGATTTTTCCCCTTTCTCCTACTTCTTT
CATTGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTCCTGTTACATTAAGTGAACATCCT
TCCATATGTGCTGGTATAGAATATAAGTATTCTTTCTTCTGACCTCTGCC
TTCATGTGGACCTTCAGAGTTGTGCTGTCACAAGGGTCTGATGTCGTCTT
TTGCTGTCCCCATGCCTATTAACTTCCTGCTACAGTAAAGAACATTTTAA
AGGTCTTGTAGGACATTGAACTGAAATATAACAGGCCAGTCGTGAGATGC
AGGCTCCTAAGGTATAAAATGCTAATCACGTGACTCAGTGTTGTCTACTA
TGGCCTTGCTAGCCTGTTCTTGATTTTCTAAACTGACATAGGCTTTCACT
AACGTATTGAAACTCTGTATAATGCTTGCTCTGCATAAGCTAGCTAATCG
CTTAACTCTACTTTTACCTTGTTCTACACCTCGACCTGCGATCTTATGTT
GTCTTGCGTCTTTTTTCCTTTCATCTCCCCCTCATATTACCATGTTTTCT
CTCTCCGCTTATTCCTCCCCCCTCTCCCCTTCCTTCTTTTCTTCCTTTCT
TTTTTTATCCCCTTTACCATACTCTTCTTTTTCATTTTCTTTGTTCTCTA
CCCTTATCCCATACTATATCCCCGCTAATTAGTTTTCTTATTTCCTCATT
CTCTCTTTCTTCTCCCTCTCCTTACTTCTTTTTCTTCCCACTTTTTTTCT
CCTCCTATCGCATTATTCCGCTCATTTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_i08.g1 MSMg01no402_i08.g1 CHROMAT_FILE:
MSMg01no402_i08.g1 PHD_FILE: MSMg01no402_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:26 2005
         (188 letters)



>mm_chr2_22257994_22258581
          Length = 588

 Score =  360 bits (186), Expect = e-104
 Identities = 186/186 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcctgttacattaagtgaacatccttccatatgtgctggtatagaatataagtattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttcctgttacattaagtgaacatccttccatatgtgctggtatagaatataagtattc 260

                                                                       
Query: 61  tttcttctgacctctgccttcatgtggaccttcagagttgtgctgtcacaagggtctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcttctgacctctgccttcatgtggaccttcagagttgtgctgtcacaagggtctgat 320

                                                                       
Query: 121 gtcgtcttttgctgtccccatgcctattaacttcctgctacagtaaagaacattttaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcgtcttttgctgtccccatgcctattaacttcctgctacagtaaagaacattttaaag 380

                 
Query: 181 gtcttg 186
           ||||||
Sbjct: 381 gtcttg 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)