BAC Information

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BAC

Clone NameMSMg01-403J12
Chromosome2 (Build37)
Map Location 168,955,974 - 168,956,446
singlet/doubletsinglet
Overlap genenone
Upstream geneAdnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403J12.T7 (MSMg01no403_j12.b1)MSMg01-403J12.TJ (MSMg01no403_j12.g1)
ACCAG502468AG502469
length750741
length of high quality
(start - end)
471 (60 - 530)408 (69 - 476)
definitionCHROMAT_FILE: MSMg01no403_j12.b1 PHD_FILE: MSMg01no403_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:56 2005CHROMAT_FILE: MSMg01no403_j12.g1 PHD_FILE: MSMg01no403_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAGTTACCATACCTACCTGTGTGCCACCATGTTCTCCCACCAATGTT
CCACAGAGAAACCCTGTCTCGGAAAACAAAACATACAAAAACCGAAAAAC
AAAATTGCATCTAATGGATACATCTAGTATTTAAGCAGATCTTCTTTTTT
TCCATCCTGATCACAGTGTTCTGGGTTTTCCTAGCGACCATTTGCTCTTT
GACTTGTGTGGCTTTTTTTTTTTCAGATCTTCTAACAAAGAAAAAGATAC
AAATGGGTTGGGTGAAAGTCCCAGGACAGCTGCACAGATGGTAAAAGTTG
CCAGTAGCTTAGCTGGTGACCAGGCTCGTTAGGGACACACAAGTCTACAG
GACGCAGACAGAACTTGTGTGGAGCCTGACAAAGGCAGTGGAACCCAGGC
ACCGTCTGTACTGTGTGAGTCGCACACTGTCTCTCTGAGAGACTGGACTG
AGTTCCATTGGTTTCAGACAACTTTCCTCTGTGGTCTTCTATTTATGACC
TACTGTTTATGACCGTCCTAAAGGTTGGTCAGCACAATGTCCCATGATGT
TAAAAGACTTTCTAACCCATGTGGCGAGTCATGAACTATGGTTTTTGTAT
TAATTGTGGCGACTAAATCTTCCTCCCTCTTTTGAGGGGCAACTCCCCCA
TTTCTGCCCTTCCCACCTTGTTTTTTTATACACACACTTTCTTTTTATTT

TACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCCCACGAGGAATTCCAGTTTTATGTTTAATACCGAATTCTTT
ACAGAATGAAATAAAGTTTTTACTGGAATAAGATGGCCCATTGTCTGTCT
TAATAAGTTTAGGCAATCCCATGGCATTAAATGCTTGTAGGCAATGATCA
ATTACGTTTTTTGAAGCTTCTCCTGTATGCAGAGAAGCAAAAAGAATTCC
TGAACAAGTATCAATGCAGACATGTATATATTTTAGTTTTCCAAATTCTG
CATAATGGGTTAAATCCATTTGCCAAATATGATTAGGCATAAGGCCTCTA
GGATTAACTCCTAGATGCGGCACTGGAGATAAAGTAATACATTTAGGACA
TTGTTTTAGATCATTCTCGCTTGCTCCTTTGTGATCTTATGTCGGAGTCT
TACGGTATGGCTAGAAAGATGAAACCTCTCGTGATCCCGTTGGGTCAAAG
CAACCCAATCTGAAACTAACGCTTCTCCTATTACAGCTCTGTCAATGTGA
TCATTACCCTCTGTCACAGGTCCAGGAAGATCTTAGTGAGACCGCACGCG
TCCCATACCCACGGACCTCCTCCGGCCAGTCTGATGTTTCCTATTTTTTA
CCTTATCCACCCGCCGTTGCCCTCCTCTTCTTCTCCCCCCCTCCCTTCCC
CTTTTTTTCTCCCTTTTCCTCCCTTACCCTCTTTCTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_j12.b1 MSMg01no403_j12.b1 CHROMAT_FILE:
MSMg01no403_j12.b1 PHD_FILE: MSMg01no403_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:56 2005
         (471 letters)



>mm_chr2_168955774_168956646
          Length = 873

 Score =  803 bits (415), Expect = 0.0
 Identities = 458/473 (96%), Gaps = 2/473 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatacctacctgtgtgccaccatgttctcccaccaatgttccacagagaaaccctgtct 60
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 201 ccatacctacctgtgtgccaccatgttcccccaccaatgttacacagagaaaccctgtct 260

                                                                       
Query: 61  cggaaaacaaaacatacaaaaaccgaaaaacaaaattgcatctaatggatacatctagta 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgaaaaacaaaacatacaaaaaccgaaaaacaaaattgcatctaatggatacatctagta 320

                                                                       
Query: 121 tttaagcagatcttctttttttccatcctgatcacagtgttctgggttttcctagcgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaagcagatcttctttttttccatcctgatcacagtgttctgggttttcctagcgacc 380

                                                                       
Query: 181 atttgctctttgacttgtgtggcttttttttttt--cagatcttctaacaaagaaaaaga 238
           ||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||
Sbjct: 381 atttgctctttgacttgtgtggcttttttttttttccagatcttctaacaaagacaaaga 440

                                                                       
Query: 239 tacaaatgggttgggtgaaagtcccaggacagctgcacagatggtaaaagttgccagtag 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 tacaaatgggttgggtgaaagtcccaggacagctgcacagatggtaaaagttgccagtgg 500

                                                                       
Query: 299 cttagctggtgaccaggctcgttagggacacacaagtctacaggacgcagacagaacttg 358
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 cttagccagtgaccaggctcgttagggacacacaagtctacaggacgcagacagagcttg 560

                                                                       
Query: 359 tgtggagcctgacaaaggcagtggaacccaggcaccgtctgtactgtgtgagtcgcacac 418
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 561 tgtggagcctgacaaaggcagtggaacccaggcaccgtctgtaccgtgtgcgtcgcacac 620

                                                                
Query: 419 tgtctctctgagagactggactgagttccattggtttcagacaactttcctct 471
           ||||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct: 621 tgtctctctgagatactggactgagttccagtggtttcagacagctttcctct 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 873
Length adjustment: 10
Effective length of query: 461
Effective length of database: 863
Effective search space:   397843
Effective search space used:   397843
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)