Query= MSMg01no403_m06.b1 MSMg01no403_m06.b1 CHROMAT_FILE:
MSMg01no403_m06.b1 PHD_FILE: MSMg01no403_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:10 2005
(529 letters)
>mm_chr2_95114162_95115091
Length = 930
Score = 915 bits (473), Expect = 0.0
Identities = 523/563 (92%), Gaps = 40/563 (7%)
Strand = Plus / Plus
Query: 5 gaattctttctttc--ccctagaaacactctgtagctaatattttacatatactatgtta 62
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctt-caaccctagaaacactctgtagctaatattttacatatactatgtta 263
Query: 63 taagaaccctgatcggtcttatatgtatggtttaatggttcccattgtcaaatgaagata 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taagaaccctgatcggtcttatatgtatggtttaatggttcccattgtcaaatgaagata 323
Query: 123 gcccaaagcccctggagtaaaaagtaattttcccaagttctcaggaaaatgcagtaaatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcccaaagcccctggagtaaaaagtaattttcccaagttctcaggaaaatgcagtaaatg 383
Query: 183 atttgcagaccatactctgaagatgaccagaaaaggtagtgtcatgcaccaaattctttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atttgcagaccatactctgaagatgaccagaaaaggtagtgtcatgcaccaaattctttt 443
Query: 243 agagaactatataaaatgctaagtacattttggtccagtagtgcaaaaaacacatcacat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agagaactatataaaatgctaagtacattttggtccagtagtgcaaaaaacacatcacat 503
Query: 303 aataagttataatctcatcaaattagaagagaggctttcttgtttgttgtaggtatgcct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aataagttataatctcatcaaattagaagagaggctttcttgtttgttgtaggtatgcct 563
Query: 363 ctgtcaaggatatatatata------------------tatatatatgtatatatat--- 401
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 564 ctgtcaaggatatatatatacatatatatacatatatatatatatatgtatatatatgta 623
Query: 402 ---------------atcagcatctctagagtatatcttcctcaactttccatccactaa 446
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tatatgtatatatatatcagcatctctagagtatatcttcctcaactttccatccactaa 683
Query: 447 actagatagcatttatatatctctttcattagaaaacaaaaaaacagtccatcctttctc 506
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 684 actagatagcatttatatatctctttcattagaaaacaaaaaa-cagtccatcctttctc 742
Query: 507 ttagctccaaactttgtctctgt 529
|||||||||||||||||||||||
Sbjct: 743 ttagctccaaactttgtctctgt 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space: 477480
Effective search space used: 477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_m06.g1 MSMg01no403_m06.g1 CHROMAT_FILE:
MSMg01no403_m06.g1 PHD_FILE: MSMg01no403_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:10 2005
(437 letters)
>mm_chr2_95282642_95283477
Length = 836
Score = 775 bits (401), Expect = 0.0
Identities = 428/437 (97%), Gaps = 1/437 (0%)
Strand = Plus / Minus
Query: 1 actcatgctttacttaatttttgtttaatatattattcagtaaatgtttattgggcatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 actcatgctttacttaatttttgtttaatatattattcagtaaatgtttattgggcatct 577
Query: 61 ttgtttgtacagagatatgcatagttttatgaacactgaggaaataaggactacacctga 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ttgtttgcacagagatatgcatagttttatgaacactgaggaaataaggactacacctga 517
Query: 121 attctgtactttaagagaacagcagataatactaaaccaaatgcctcatacgaattcaaa 180
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 516 attctgtactttaagaggacagtagataatactaaaccaaatgcctcatacgaattaaaa 457
Query: 181 ggggcaagtagaatggaatctatcagatgtgtagtatcccaaaaatgagtgacagaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 456 ggggcaagtagaatggaatctatcagatgtgtagtatcccaaaaatgagtggcaga-ggt 398
Query: 241 gtggtgtaagttcacacccttcatcttcctcagggaaatgtgtggttgccatgtttatag 300
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 397 gtggtggaagttcacacccttcatcttcctcagggaaatgtgtggttgctatgtttatag 338
Query: 301 tgaagttgccaaaataccatgaaattagttggatggttggttatatttctagttatgtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgaagttgccaaaataccatgaaattagttggatggttggttatatttctagttatgtct 278
Query: 361 tctagactttcttagagattatgcatgtttatcaactctggggagatggaagtcatgatc 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 277 tctagactttcttagagattatacatgtttatcaactctggggagatggaagtcatgatc 218
Query: 421 atggaagcatttctgag 437
|||||||||||||||||
Sbjct: 217 atggaagcatttctgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 836
Length adjustment: 9
Effective length of query: 428
Effective length of database: 827
Effective search space: 353956
Effective search space used: 353956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
