BAC Information

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BAC

Clone NameMSMg01-404C08
Chromosome2 (Build37)
Map Location 80,825,979 - 80,826,486
singlet/doubletsinglet
Overlap genenone
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624
Downstream geneLOC100040655, LOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404C08.T7 (MSMg01no404_c08.b1)MSMg01-404C08.TJ (MSMg01no404_c08.g1)
ACCAG502888AG502889
length768757
length of high quality
(start - end)
508 (65 - 572)248 (66 - 313)
definitionCHROMAT_FILE: MSMg01no404_c08.b1 PHD_FILE: MSMg01no404_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:42 2005CHROMAT_FILE: MSMg01no404_c08.g1 PHD_FILE: MSMg01no404_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATTCATGAA
ATTTTCCAAAAGAGGATGGAACTAGAAAATATCATCCTGAGTGGGGTAAC
CCAGTCAGAAAAGAACACACTCACTGATATTAGCCCAAAGCTTGGAATAC
CCAAAATACAATTCACAGACCACATGAAACTCAAGAAGAAGGAAGACCAA
AGTGTGGATGCTTCAGTCCTTCTTAGAAAGGGGAACAAAATATGGGAGGA
AATACAGAGACAAAGCGTGGAGCAGAGACTGTAGGAAAGACCATCCAGAG
ACTGCCCCACCTATGTATCCATTCCCATATACAGACACCAAAACCAGACA
CTATTGTGGATGCCAAGAAGTGCTTGCTGACAGAAGCCTGATATAGCAGT
CTCCAGATCATGTTTGGAAGTTATTTACATATTGTAGATCATATCTACAT
ATGAATTCATCTGTGACCCAATGCAAATGAACTTGTCAACAAAACTCCAA
AAGCAAACCAAACTAACCAGATAAAACATACTGAAAAAATAAAGTTGAAG
GAAGAAAGATTGACTTGGGTTTACACTTTCAGACATACCAACCAGTTCCA
GTTGGAGGACCCCGATGCTTTTAAGCCTGTGGCAAGAAAGTGCAATTTGA
TGAAACCAAGATCTCCCTTCACTTCCTATCACAAGGGAACTTCTTTTCTT
TCATAATGGGGCCCTTCCCCCCTTTTTCTCCCCCCTTCCAAAAATTTTTA
ATCTGCTTTTGACTACCN
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTGTAAATTGGGT
TATTTGGTTTTCTGGAGTCTAACTTGTGAGTTCTTTGTATATTTTGGATA
TTAGCCCTCTATTCAATGTAGGGTTAGTAAAGATCTTTCCCAATCTGTAA
GTTACTGTTTTGTCCCACTGACAGCGTCCTTTCTCTTACAGAAACTTGTA
GTTTCATGAGGTCTCATTTGTCAATTGTTGCTCATTTTTATAGTACCTAG
AAGATACAACTATTTCTTTTTTAGTCAGAGACTAGGGTCTCAGAATGCTC
AACTATAAAATGGCAGCAGGTAAATATCCCTATCTTCCATTTCATTTATT
ATAGTATTTATCTAATAATATATTCATTAAAAGAAGGTATAATTATTAAT
TATAACTCTGACTACAGCAGTTAGCTCAATCCATGTAAGTATTATAGAAA
TGCCTTTCTTCATGTAACTAAACATCTATTGGCATATATATACCGAGAGA
GATTAGATAGATTTAGATATAGCCCCTCATTAGCTACTGAAACTGTTATT
TTTCTTTCCCCCTCTCTTTTTTATTCTCCTACTTATACTTCTCTTTTATC
CCCGTTCCGGTTTATTTTTTCCTTTCCCCCACTTTCCCTTTTGACCATAT
TTTCTTTTTTGGTCCGTAAATTTTTCACCTTATTTCTTTAAATTATCTCA
ATGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_c08.b1 MSMg01no404_c08.b1 CHROMAT_FILE:
MSMg01no404_c08.b1 PHD_FILE: MSMg01no404_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:42 2005
         (508 letters)



>mm_chr2_80825779_80826686
          Length = 908

 Score =  951 bits (492), Expect = 0.0
 Identities = 504/508 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggaactagaaaatatcatcctgagtggggtaacccagtcagaaaagaacacactcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatggaactagaaaatatcatcctgagtggggtaacccagtcagaaaagaacacactcac 260

                                                                       
Query: 61  tgatattagcccaaagcttggaatacccaaaatacaattcacagaccacatgaaactcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatattagcccaaagcttggaatacccaaaatacaattcacagaccacatgaaactcaa 320

                                                                       
Query: 121 gaagaaggaagaccaaagtgtggatgcttcagtccttcttagaaaggggaacaaaatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaaggaagaccaaagtgtggatgcttcagtccttcttagaaaggggaacaaaatatg 380

                                                                       
Query: 181 ggaggaaatacagagacaaagcgtggagcagagactgtaggaaagaccatccagagactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggaaatacagagacaaagcgtggagcagagactgtaggaaagaccatccagagactg 440

                                                                       
Query: 241 ccccacctatgtatccattcccatatacagacaccaaaaccagacactattgtggatgcc 300
           ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ccccacctagggatccattcccatatacagacaccaaacccagacactattgtggatgcc 500

                                                                       
Query: 301 aagaagtgcttgctgacagaagcctgatatagcagtctccagatcatgtttggaagttat 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaagtgcttgctgacagaagcctgatatagcagtctccagatcatgtttggaagttat 560

                                                                       
Query: 361 ttacatattgtagatcatatctacatatgaattcatctgtgacccaatgcaaatgaactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacatattgtagatcatatctacatatgaattcatctgtgacccaatgcaaatgaactt 620

                                                                       
Query: 421 gtcaacaaaactccaaaagcaaaccaaactaaccagataaaacatactgaaaaaataaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcaacaaaactccaaaagcaaaccaaactaaccagataaaacatactgaaaaaataaag 680

                                       
Query: 481 ttgaaggaagaaagattgacttgggttt 508
           ||||||||||||||||||||||||||||
Sbjct: 681 ttgaaggaagaaagattgacttgggttt 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)