BAC Information

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BAC

Clone NameMSMg01-404G14
Chromosome2 (Build37)
Map Location 10,477,770 - 10,661,185
singlet/doubletdoublet
Overlap geneSfmbt2
Upstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5
Downstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404G14.T7 (MSMg01no404_g14.b1)MSMg01-404G14.TJ (MSMg01no404_g14.g1)
ACCAG503087AG503088
length758757
length of high quality
(start - end)		244 (60 - 303)433 (63 - 495)
definitionCHROMAT_FILE: MSMg01no404_g14.b1 PHD_FILE: MSMg01no404_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:04 2005CHROMAT_FILE: MSMg01no404_g14.g1 PHD_FILE: MSMg01no404_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,477,770 - 10,478,013)(10,660,753 - 10,661,185)
sequence
GGGCGCTATACGACTCACTATTCCAACACGACCGCGGAANTCCTGGCATT
CCCTTTTAAATATGAAGAGTCCTCAGTGTGCCAATTCTTTCTTCTTAAGC
CTGTGCCCTTAATAGTTGATTTTCTTTATCCACAGATTATTATCCCCAGT
GCCTATTGAGAAAATACCTCATGAGCTTTGCTTGCTGCCGCCGCAGATGG
ACAGTCCAGGTAAATACTCCTCATGAAAGACGCCATCTCTTCCACTGCAT
CGTTGTGACGGCAGACGTGTGTGGCTATAGTCTCTGCTTCTCAACTTTGA
GCCTTTTTCTTTCCTTCCTTTCTGATGCTACGCACTCACAGACAGACATT
TAAAAAGAACTTTTATGAAGCTAAAGTTGTACTTCATCTTTACTACTGCT
TGGTCAGGGTCTGTAGACCGGTCTTATAATCTTCAGGAAAAGAACGGGTT
TGATATTTGGCCATTGTAAATCAGATTAGCATCCTGCATCCCTGACCATG
GTAAAGAAAAGGAAAACATGGAGAACTGGTATTGGCCATTCCTTCCTTGT
TATTTAATCACAGTTCCACGTGACTTTTAAAGTCATGGTCTTGCTAGGTA
GCCCAGGCTAGTCTTGACTTCCTCAACCTCGTGCCTCGGGCTATTTAGTA
CCTTGGATTTCAAGTGGGTGCCACTGGCTCCGGTTTAACTATTTTGCCCA
CTTGCCCCCGGACTTAAATAAATTCCCCTTCTTGATTTATTTCCGCTCTA
ACACCAAN

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGAGAATGTTTTTGCTGGAGGCAGGATCTGCAGTCCTT
GCTTCTGTGTTACCTCTAACCCTTGCCTAGAAGCTACGCTGGGGGTCGTG
ACTGGAACAGACAGAAGATTCTTGGTCACCTCGTGGTTGTGCCACCTGAA
CTGGACTATTCATTGCCCGTCCGTATGCCCCCCTCTGTTCTGCTGTACAT
CTTTAGAGAAGCCTGCAGACAGTTTAGCAAATGGATGACACCCCAACCCC
AGGGACCTGTTATACAGGAGCTTCGCCATCTTTCTGTCTCTTAAGATTCC
ACCCAACTGAGCTCTAATTCATTCATCTCAACAAGTCCGAGTACAGCAGA
ACCCCAGTGGTAGGAGCCAGGCAGAAGCATCAAAGTTGCAGCTAGTGTAT
GAGAAAGCCAATCACACATTTGTCTGCATGTGGCTGCTTACTTCAGGTCT
ATATTGTGTTCGTCTCATACCCAGGTACCAGATGAATGAGAAGAAATAAT
GAGGAAAGGACATGACTACCCCTGCGTATGATGTAGGATAACATTTTTTG
TTCTCCCCGGCGCTTTTTTTTTTCCCAACTTATTGACTTTCTGTGGATAT
GACTAAACCCCACATTATTTCACTCTATCTTCTCCCTTCTAATATTAAAT
AATTTAATTAGTGCTATTTTCTTCTTCCTCTCTTTTTGTTTCTTTTATAT
TTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_g14.b1 MSMg01no404_g14.b1 CHROMAT_FILE:
MSMg01no404_g14.b1 PHD_FILE: MSMg01no404_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:04 2005
         (244 letters)



>mm_chr2_10477570_10478213
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgaagagtcctcagtgtgccaattctttcttcttaagcctgtgcccttaatagttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgaagagtcctcagtgtgccaattctttcttcttaagcctgtgcccttaatagttga 260

                                                                       
Query: 61  ttttctttatccacagattattatccccagtgcctattgagaaaatacctcatgagcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttctttatccacagattattatccccagtgcctattgagaaaatacctcatgagcttt 320

                                                                       
Query: 121 gcttgctgccgccgcagatggacagtccaggtaaatactcctcatgaaagacgccatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgctgccgccgcagatggacagtccaggtaaatactcctcatgaaagacgccatctc 380

                                                                       
Query: 181 ttccactgcatcgttgtgacggcagacgtgtgtggctatagtctctgcttctcaactttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccactgcatcgttgtgacggcagacgtgtgtggctatagtctctgcttctcaactttg 440

               
Query: 241 agcc 244
           ||||
Sbjct: 441 agcc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no404_g14.g1 MSMg01no404_g14.g1 CHROMAT_FILE:
MSMg01no404_g14.g1 PHD_FILE: MSMg01no404_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:04 2005
         (433 letters)



>mm_chr2_10660553_10661385
          Length = 833

 Score =  760 bits (393), Expect = 0.0
 Identities = 423/433 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagaatgtttttgctggaggcaggatctgcagtccttgcttctgtgttacctctaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 633 tgagaatgtttttgctggaggcaggatctgcagtccttgcttccgtgttacctctaaccc 574

                                                                       
Query: 61  ttgcctagaagctacgctgggggtcgtgactggaacagacagaagattcttggtcacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttgcctagaagctacgctgggggtcgtgactggaacagacagaagattcttggtcacctc 514

                                                                       
Query: 121 gtggttgtgccacctgaactggactattcattgcccgtccgtatgcccccctctgttctg 180
           ||||||||||||||||| |||||||||||||||||| ||| |||| ||||||||| ||||
Sbjct: 513 gtggttgtgccacctgacctggactattcattgcccttccttatgtccccctctgctctg 454

                                                                       
Query: 181 ctgtacatctttagagaagcctgcagacagtttagcaaatggatgacaccccaaccccag 240
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 453 ctgtacatctttagagaagcctgcagacagtttagcaaatggatgacatccgaaccccag 394

                                                                       
Query: 241 ggacctgttatacaggagcttcgccatctttctgtctcttaagattccacccaactgagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggacctgttatacaggagcttcgccatctttctgtctcttaagattccacccaactgagc 334

                                                                       
Query: 301 tctaattcattcatctcaacaagtccgagtacagcagaaccccagtggtaggagccaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tctaattcattcatctcaacaagtccgagtacagcagaaccccagtggtaggagccaggc 274

                                                                       
Query: 361 agaagcatcaaagttgcagctagtgtatgagaaagccaatcacacatttgtctgcatgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 273 agaagcatcaaagttgcagctagtgtatgagaaagccaatcacaggtttgtctgcatgtg 214

                        
Query: 421 gctgcttacttca 433
           |||||||||||||
Sbjct: 213 gctgcttacttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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