BAC Information

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BAC

Clone NameMSMg01-404M11
Chromosome2 (Build37)
Map Location 111,339,489 - 111,339,839
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290
Downstream geneGA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404M11.T7 (MSMg01no404_m11.b1)MSMg01-404M11.TJ (MSMg01no404_m11.g1)
ACCAG503366AG503367
length749771
length of high quality
(start - end)
381 (63 - 443)351 (65 - 415)
definitionCHROMAT_FILE: MSMg01no404_m11.b1 PHD_FILE: MSMg01no404_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:34 2005CHROMAT_FILE: MSMg01no404_m11.g1 PHD_FILE: MSMg01no404_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:34 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TGCGGCCGCTATACGACTCAAATTTCAAATAGGATCCGCGGAAATCTCAC
TATCCCGAAATCTATCTTGACTGCCCTCCGAAAGACCCAACAAGCAGCTG
AAGAGTCAGATGCAGCTAATTGCACCCAACCAATAATTAAATTCTTTTAT
TGGTTATTTTATATATTTACATTTCAAATTTTGTCCCCCTTTCCAGTTTC
CCCTCTGGAACTCCCACATCCCAGCCCCTTTGTACTTTGCCTCTTTGAGA
GTGCTCTGCCAACCACAAATCCATACCGGCCTCACTGCTCTAGCATCCCC
TTACACTGTTTTATCTAGCCTCCACAGGATCAAGAGCTTCCCCTCACACT
GATGCCAGATAAGGCAATTATCTGCTGCTTATGTAACTGGAGTCATGCAT
CCCTCCATGTGTACTCTTTGGTTGGTGGCTTATGCTCTGGGAACTCTGGG
GGTGAGGGCGTCCGGTTAGTTGATACTTTTGATTATTCCTTTGTAGTTGC
AATTCCCTTCATATCCCTCAGTAATTCCCCTAGCTCTTTTTTAAGGGACC
CCATGCTTTATTCAATGGATGGCTGATGATATATGCCTCCTGTATTTGCC
ATAAGTTGTCCAACCCATGTTTATTCTCTTTTTTTACTATTCTCTTTTTT
TTTTCATCTTTTTGTCCCACCCACATTTTCTCTTTTTCATTTTCTCCCCC
TCTTTTTCATTCTTATTTTTATCCCCTTCCCCTTTTTTTTTTCTTTTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTTTAATTGGACTCTCCAATTCTCGGGAACTTCAG
ATCTTTCTGTTTGCATTCTTTTTTGTTTTCTATGTAGGCATTGTGTTTGG
AAACCTTCTTATTGTCATAACTGTGACCAATGACTCCCACCTCCATTCGC
CTATGTACTTTCTGTTGGCCAACCTCTCATTCATAGATCTGTGTGTGTCC
TCTGTCACAGCTCCAAAGACTATTGCTGATTTTTTCTACAAACGCAAAGT
CATCTCTGTTATTGGCTGCTTTACACAAATATTCCTCCTTCACTTTTTTG
GGGGGAGTGAGATGGTAACCCTTGTAGCCATGGCCTTTGATAGATACGTA
TCAATTTGTAAGCCTCTAAGCTACACTACAGTTATGCGTGGCAATGTATG
TGTCAGCATTGTGGCTACTGCATGTGTAATTGGCTTCCTACATTCAGTGA
GCCAATTGGCCTTTGCTATAAATTTTACCCTTCTGTCGTCTCATTAATTT
CGACTGTTTTTCATTGTGTTTTTTCCTAAATACATAATCTTGCCCGCCTC
CTTTCATTTAACACTATAAATCCCGCCCCCCTTCTTATTAACCCCCCTCT
CCTATTTTCATTTTCTTCTTTATTTGCTTATCTATCTTCTTTTCAATTCC
CTCCTTTAAATTCTTTTATCCACTTTAACTTTTATTCATAACCCCCCCCA
TTTTTCTTATTTTAATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_m11.g1 MSMg01no404_m11.g1 CHROMAT_FILE:
MSMg01no404_m11.g1 PHD_FILE: MSMg01no404_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:34 2005
         (351 letters)



>mm_chr2_111339289_111340039
          Length = 751

 Score =  346 bits (179), Expect = 1e-99
 Identities = 311/355 (87%), Gaps = 8/355 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttaattggactctccaattctcgggaacttcagatctttctgtttgcattctttttt 60
           ||||| |||||||||||  |||||| |||||||||| ||||| |||||||||||||| | 
Sbjct: 201 atttttattggactctctgattctcaggaacttcaggtctttttgtttgcattctttctc 260

                                                                       
Query: 61  gttttctatgtaggcattgtgtttggaaaccttcttattgtcataactgtgaccaatgac 120
            ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct: 261 attttctatgtaggaattgtgtttggaaaccttcttattgtcatgactgtaacctatgac 320

                                                                       
Query: 121 tcccacctccattcgcctatgtactttc-tgttggccaacctctcattcatagatctgtg 179
           ||||||||||| || |||||||| |||| ||||||||||||| |||||||| ||||||||
Sbjct: 321 tcccacctccactctcctatgta-tttcctgttggccaacctttcattcatcgatctgtg 379

                                                                       
Query: 180 tgtgtcctctgtcacagctccaaagact-attgctgattttttctac-aaacgcaaagtc 237
           | |||| ||||||||||| ||||||| | ||||||||||||||| |  ||||||||||||
Sbjct: 380 tctgtcttctgtcacagcaccaaaga-tgattgctgattttttc-aggaaacgcaaagtc 437

                                                                       
Query: 238 atctctgtt-attggctgctttacacaaatattcctccttcacttttttggggggagtga 296
           ||||||||  || ||||| ||| | || ||||| ||||||||||| |||||||||| |||
Sbjct: 438 atctctgtccat-ggctgttttgcccagatatttctccttcacttctttggggggaatga 496

                                                                  
Query: 297 gatggtaacccttgtagccatggcctttgatagatacgtatcaatttgtaagcct 351
           |||||| |||||  ||||||||| |||||| ||||| ||| ||||||||||||||
Sbjct: 497 gatggtgaccctcatagccatgggctttgacagatatgtagcaatttgtaagcct 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)