BAC Information

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BAC

Clone NameMSMg01-405D04
Chromosome2 (Build37)
Map Location 145,049,330 - 145,209,519
singlet/doubletdoublet
Overlap geneSlc24a3
Upstream geneSnx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneLOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405D04.T7 (MSMg01no405_d04.b1)MSMg01-405D04.TJ (MSMg01no405_d04.g1)
ACCAG503686AG503687
length772825
length of high quality
(start - end)
492 (50 - 541)241 (81 - 321)
definitionCHROMAT_FILE: MSMg01no405_d04.b1 PHD_FILE: MSMg01no405_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:06 2005CHROMAT_FILE: MSMg01no405_d04.g1 PHD_FILE: MSMg01no405_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,049,330 - 145,049,818)(145,209,281 - 145,209,519)
sequence
TTTCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATGCATCTGGGCCTATCTGGTTCTAGCAGTAAATCACCAG
TAAAACAATCTAGCTAAGCAGAAGGCTTCCTATTTAATATTAGTGCAGGA
AAGACCCCAAATCACACGTAAATTAACTGGGTGATTCTCCAAGGCACAGT
GACCTCATGAGGAAGCACACATGAGCTCTCATAGAGGTGCACAGAGAGTG
TTTGCCCCTGAGATGAGTTATTCCATGGCTCAGTCCAGAGAGGACTTTTG
CCCATGAGGTTTTGCTACTTGAGGTTAAGCTGACCAACACCTCTGATGAG
AAGACAGGACAAACTCCTGTGGAAAAGGGCCTGAAGCCAAGGTACAGCTT
GAGACACTGGGAGAGTTGGCTTGTCTCTGGAGTAAGGAATTGAGTAGTCA
TGGTTCTGGAGCAGGCTGCTCCGCACTGCCTGATGTGCCTTAGTGATATA
TTCAGGGTGCTTGGCTACAGTGGGTGTCAGCATATTGTCCTAAGCCCTGA
GGCAGAGTAACCATGATCTTATAAGCTCCTCTGAATGGCAGTACACTGTC
ATGTTTAATGATCAGTCAGTGATAAGCATCCTTGTCCACATACCCAGACA
TGGGTTTCACCTGGAAGGGCTCATTGTGGACACTGAAATTTGGCCCAGGC
GCTTGCTCCTGCTTTCCCAAAAACGGCACCAATGGGGACAAATCCTCTAT
TATTGCCCCTAATGAAACCCCN
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGACTGATTTTCATGA
AAAGGTGTGTCAGGCTGGTTCACCCTGTGCGGCTGCACACCTGGAACACC
TGTCCGACTGTAACTAGAGGAATATTTCTCATAGTCCAGAGCGGAGTCTC
CCTGCCAGCACCGGCCGTGGCTTTCAGCCCATTCTCTCCTAGCAAAGCTG
CTTAGTCCTTAAATCGCAAGGAGTTGGTTTTCAGCCAGGCAGCAGCGGGG
GTGGGAGTGGGGGTGGGTGTCTCTTTCTTTCTCGCGCCCCCCCCGCTTCT
TCCCCTTTACTTGCTTTTGGCCTCTCCTCTTTTTCTTTTGTTTCTCTCCC
TTGTCCCTCTTTTTTCTCTCTCCCCTTTCCCCCCTTCTTCCTTTTTTTTC
TTCCCTTTCATCCCTCCTTTCCTTCTATTCTTCTTCATTTTTCTCTTATT
TCTCTATTTCCTCCTGTTCTTCCCTTTTTCCTCCCTCCTTTTTTTTTTTT
TTTTCGTCCTTTTCTCTTTTCTCCCCTCTTCCCTTATCTTTTCTTTTTTC
TCCTCTTTTCCCTTCCCCCTCTTTTTTTTTCCTTTTTCCCCCTCCCCCCT
CTTTTCTCCCTTTTTACTCCCTTTCTTCTTTTCCCCTTCTTTTAATTCCT
ATTTTCTCCTAGCTTATTCCCTCCCTGTTTTTTCTTTCTTTTTCCCCTCT
CTTCCCTTCTTTTTCCCCCTTCTTTCTTCTCGTTTTTACCTTCTTAATTC
TCTTTATTTCTCCATCACTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_d04.b1 MSMg01no405_d04.b1 CHROMAT_FILE:
MSMg01no405_d04.b1 PHD_FILE: MSMg01no405_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:06 2005
         (492 letters)



>mm_chr2_145049127_145050018
          Length = 892

 Score =  907 bits (469), Expect = 0.0
 Identities = 484/489 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatgcatctgggcctatctggttctagcagtaaatcaccagtaaaacaatcta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatgcatctgggcctatctggttctagcagtaaatcaccagtaaaacaatcta 263

                                                                       
Query: 64  gctaagcagaaggcttcctatttaatattagtgcaggaaagaccccaaatcacacgtaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 264 gctaagcagaaggcttcctatttaatattagtgcaggaaagaccccaaatcacacgtaac 323

                                                                       
Query: 124 ttaactgggtgattctccaaggcacagtgacctcatgaggaagcacacatgagctctcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaactgggtgattctccaaggcacagtgacctcatgaggaagcacacatgagctctcat 383

                                                                       
Query: 184 agaggtgcacagagagtgtttgcccctgagatgagttattccatggctcagtccagagag 243
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 384 agaggtgcacagagagtgtttgcccctgagatgagtcattccatggctcagtccggagag 443

                                                                       
Query: 244 gacttttgcccatgaggttttgctacttgaggttaagctgaccaacacctctgatgagaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gacttttgcccatgaggttttgctacttgaggttaagctgaccaacacctctgatgagaa 503

                                                                       
Query: 304 gacaggacaaactcctgtggaaaagggcctgaagccaaggtacagcttgagacactggga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gacaggacaaactcctgtggaaaagggcctgaagccaaggtacagcttgagacactggga 563

                                                                       
Query: 364 gagttggcttgtctctggagtaaggaattgagtagtcatggttctggagcaggctgctcc 423
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagctggcgtgtctctggagtaaggaattgagtagtcatggttctggagcaggctgctcc 623

                                                                       
Query: 424 gcactgcctgatgtgccttagtgatatattcagggtgcttggctacagtgggtgtcagca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcactgcctgatgtgccttagtgatatattcagggtgcttggctacagtgggtgtcagca 683

                    
Query: 484 tattgtcct 492
           |||||||||
Sbjct: 684 tattgtcct 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no405_d04.g1 MSMg01no405_d04.g1 CHROMAT_FILE:
MSMg01no405_d04.g1 PHD_FILE: MSMg01no405_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:07 2005
         (241 letters)



>mm_chr2_145209081_145209721
          Length = 641

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcagactgattttcatgaaaaggtgtgtcaggctggttcaccctgtgcggctgcacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatcagactgattttcatgaaaaggtgtgtcaggctggttcaccctgtgcggctgcacac 380

                                                                       
Query: 61  ctggaacacctgtccgactgtaactagaggaatatttctcatagtccagagcggagtctc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccggaacacctgtccgactgtaactagaggaatatttctcatagtccagagcggagtctc 320

                                                                       
Query: 121 cctgccagcaccggccgtggctttcagcccattctctcctagcaaagctgcttagtcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cctgccagcaccggccgtggctttcagcccattctctcctagcaaagctgcttagtcctt 260

                                                                      
Query: 181 aaatcgcaaggagttggttttcagccaggcagcagcgggggtgggagtgggggtgggtg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaatcgcaaggagttggttttcagccaggcagcagcgggggtgggagtgggggtgggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)