Query= MSMg01no405_o19.b1 MSMg01no405_o19.b1 CHROMAT_FILE:
MSMg01no405_o19.b1 PHD_FILE: MSMg01no405_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:04 2005
(232 letters)
>mm_chr2_63795084_63795716
Length = 633
Score = 435 bits (225), Expect = e-126
Identities = 231/233 (99%), Gaps = 1/233 (0%)
Strand = Plus / Plus
Query: 1 gaagtg-cattgcttctagtgagctttatttccttggacaccactctcttgccaaataat 59
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagtgacattgcttctagtgagctttatttccttggacaccactctcttgccaaataat 260
Query: 60 acgcatggaatttatagattcaaaaacaaaaagtatgatgaaatcagaaatcaagagcat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgcatggaatttatagattcaaaaacaaaaagtatgatgaaatcagaaatcaagagcat 320
Query: 120 agatgaaaaatcttatataaatccatatttagagtataaaaaatagttactaggtcacac 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 agatgaaaaatcttatataaatccatatttagagtttaaaaaatagttactaggtcacac 380
Query: 180 aatgtcatggctttgatacctgttatacgtattgtccaggaagtatcacattt 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtcatggctttgatacctgttatacgtattgtccaggaagtatcacattt 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 633
Length adjustment: 9
Effective length of query: 223
Effective length of database: 624
Effective search space: 139152
Effective search space used: 139152
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no405_o19.g1 MSMg01no405_o19.g1 CHROMAT_FILE:
MSMg01no405_o19.g1 PHD_FILE: MSMg01no405_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:04 2005
(523 letters)
>mm_chr2_63972844_63973772
Length = 929
Score = 895 bits (463), Expect = 0.0
Identities = 512/531 (96%), Gaps = 10/531 (1%)
Strand = Plus / Minus
Query: 1 tgtagctgaatttttcttttgctgttgctgtttgcttaaaatttgaaactgggattgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgtagctgaatttttcttttgctgttgctgtttgcttaaaatttgaaactgggattgtct 670
Query: 61 tctctcgtttgggg--gga-tgtctgtgaggcacctaagaattgataaagagaat-gggg 116
|||||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct: 669 tctctcgtttgggggaggagggtctgtgaggcacctaagaattgataaaaagaatggggg 610
Query: 117 gagggtcacaaacagtgtgtagttgatacaaagtgtctccctaaaagttaaaggcttgat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gagggtcacaaacagtgtgtagttgatacaaagtgtctccctaaaagttaaaggcttgat 550
Query: 177 cttcaagatccgagtctggtcaacacaaagggatggggtcattagggctctgagctaatc 236
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 549 cttcaagatccaagtctggtcaacacaaagggatggggttattagggctctgagctaatc 490
Query: 237 aaatgtttgatc--tttatacggatgcccatagctcactgacaatgtagaatttctatag 294
|||||||||||| || |||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 489 aaatgtttgatccatt--tacggatgcccatagctcactggcaatgcagaatttctatag 432
Query: 295 aagacacagcatcagtgaatgaagatggtcgctactatcatggactggaataataccttg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aagacacagcatcagtgaatgaagatggtcgctactatcatggactggaataataccttg 372
Query: 355 gccccatttccttgctggtactatgtcctggatacctgagatggaggctgtagcatgccc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gccccatttccttgctggtactatgtcctggatacctgagatggaggctgtagcatgccc 312
Query: 415 ttccaccatggtgttctgcctcatcatgggccatgaaacatcagaatcagctgatcttgg 474
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttccaccatgatgttctgcctcatcatgggccatgaaacatcagaatcagctgatcttgg 252
Query: 475 gcttttaaagccc--gagaccttaaaccaaattgaatcttccttcctttta 523
||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct: 251 gcttttaaagcccctgagaccataaaccaaactgaatcttccttcctttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 929
Length adjustment: 10
Effective length of query: 513
Effective length of database: 919
Effective search space: 471447
Effective search space used: 471447
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
