NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGATTTTCTCAGCAAAGATGAAGCAAGTGAGTGTTAATC
AAACTGTGCTTCTTATTTTAAACACCTGGGAATCTTTAAATAGCTCATGC
CCAGATGCATTGCATAGTAATTATATCTGAAGTTCAGGGGTGTGACTCAG
GCACCAGTGTTTTTATATGTACCCAAGATTAAGAAACTCTCAAAGGAATA
ACAAATGAGAGATGATAGTCAAATACAAGTGTTTAAAGGAACAGGAAGGG
AGGACATAAGAAAGGAAATTGAAATAATTCATGGGTATGGAATTTGAATC
TTGCAGAAAAAGAGACAGTTCCTGGTTTTGTTGTCCCTTCATCCAAGTAC
CAGGAAATAGAGTTAGACAGCATGCCACATTTTTGTATATACATACACAT
ACAGGCATACATGCATACATACATACATATTCACATTTTTACATCCAGAA
ATTCAAGTAATAACAGCACCAAAGTCTTTTTGAGAGTCTGTACTGAATAA
TTAAAGATATTTTCTTGTCATCTTTTGTAAATCAAGCACTATTTACATAG
CATTTGCATGATAGTACATTGCAAATAGTCTAGACATTATGTAAAGCTTT
ATAACTTTATTCTAATACCATATCATTTTACATAAAAAATGCAAAATCTC
ATATTTTCTAGNCAAACTGGCTATGCTAAAATACAC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGCTGTACTCCAGAAAAT
CAGATAACCCCATTAAAAATGGGGTACAGAACTAAACAAAGAATTTTCTA
CTGAGGAATAACAAATGGCTGAGAAGCACCTGAAAAAGTGTTCAACATCC
TTAAACATCAGGAAATGCAAATCAGAACAACCCCGAGATTCCACCTTACA
CCAGTCAGAATAGCTAAGATTAAAATTACAGGTGAAAGCCCAAGCTGGTT
AGGTGTGGTGAAAGAGAAAGACTCCTCTATTGCTGGTGGAATTGCAAGCT
GGTATGACCACTCTGGAAATTAGTCTGGTGTTTACTCAGAAAATTTGGCA
TAGTACTACTGGAAGATCTAGCATTACCTCTCCTTGGCATATACCCAAAA
GTTGTTCCAAATTATAATAAGGACATGTGCTCCACTATGTTTATAGCAGC
CTCATATATAGTAGCCAGAATCTGGAAAGAACCCAGATGTCCCTCAACAA
GGAAATTAATACAGAAAATGTGATACATTTACACAATGGAGTACTACTCA
GTTATTAAAAACAATGAATTTATGAAATTCTTAAGCAAATATCTGGAGGA
TATCATCATTAGGGAGGTAATCCAATCGCAAAAAAGCTCACATGATATGC
ATTCACTGATAAGTGGATATTATCCCAGAACTTATTAACCCCC

Query= MSMg01no406_c19.b1 MSMg01no406_c19.b1 CHROMAT_FILE:
MSMg01no406_c19.b1 PHD_FILE: MSMg01no406_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:24 2005
         (589 letters)



>mm_chr2_100100457_100101443
          Length = 987

 Score = 1112 bits (575), Expect = 0.0
 Identities = 585/591 (98%), Gaps = 6/591 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagatgaagcaagtgagtgttaatcaaactgtgcttcttattttaaacacctgggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 caaagatgaagcaagtgagtgttaatcaaactgtgcttcttattttaaacacctgggaat 642

                                                                       
Query: 61  ctttaaatagctcatgcccagatgcattgcatagtaattatatctgaagttcaggggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ctttaaatagctcatgcccagatgcattgcatagtaattatatctgaagttcaggggtgt 582

                                                                       
Query: 121 gactcaggcaccagtgtttttatatgtacccaagattaagaaactctcaaaggaataaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gactcaggcaccagtgtttttatatgtacccaagattaagaaactctcaaaggaataaca 522

                                                                       
Query: 181 aatgagagatgatagtcaaatacaagtgtttaaaggaacaggaagggaggacataagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aatgagagatgatagtcaaatacaagtgtttaaaggaacaggaagggaggacataagaaa 462

                                                                       
Query: 241 ggaaattgaaataattcatgggtatggaatttgaatcttgcagaaaa--agagacagttc 298
           ||||||||    |||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 461 ggaaattg----aattcatgggtatggaatttgaatcttgcagaaaaagagagacagttc 406

                                                                       
Query: 299 ctggttttgttgtcccttcatccaagtaccaggaaatagagttagacagcatgccacatt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctggttttgttgtcccttcatccaagtaccaggaaatagagttagacagcatgccacatt 346

                                                                       
Query: 359 tttgtatatacatacacatacaggcatacatgcatacatacatacatattcacattttta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttgtatatacatacacatacaggcatacatgcatacatacatacatattcacattttta 286

                                                                       
Query: 419 catccagaaattcaagtaataacagcaccaaagtctttttgagagtctgtactgaataat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 catccagaaattcaagtaataacagcaccaaagtctttttgagagtctgtactgaataat 226

                                                                       
Query: 479 taaagatattttcttgtcatcttttgtaaatcaagcactatttacatagcatttgcatga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 taaagatattttcttgtcatcttttgtaaatcaagcactatttacatagcatttgcatga 166

                                                              
Query: 539 tagtacattgcaaatagtctagacattatgtaaagctttataactttattc 589
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tagtacattgcaaatagtctagacattatgtaaagctttataactttattc 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 987
Length adjustment: 10
Effective length of query: 579
Effective length of database: 977
Effective search space:   565683
Effective search space used:   565683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)