BAC Information

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BAC

Clone NameMSMg01-406L11
Chromosome2 (Build37)
Map Location 68,676,663 - 68,676,938
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443
Downstream geneLass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406L11.T7 (MSMg01no406_l11.b1)MSMg01-406L11.TJ (MSMg01no406_l11.g1)
ACCAG504845AG504846
length733746
length of high quality
(start - end)
276 (322 - 597)509 (74 - 582)
definitionCHROMAT_FILE: MSMg01no406_l11.b1 PHD_FILE: MSMg01no406_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:07 2005CHROMAT_FILE: MSMg01no406_l11.g1 PHD_FILE: MSMg01no406_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXAAATGCCGACTATGCGCGGAA
NNCNGANGGTAGCTACACCCGGCANNCTTCAGGAACTTGTGAAACTGGTT
TCCTTCTACCCATAAGAGTCATTTCTCTGGAAGGAGAAACATATGACTAC
CTGTGGGGCCAGGCTCCTTCAATATCACAAGCACTTGTTATATATACATT
TTGAAGTCCATGCTAGCATTTTAGCCCCTCTGGTCTCCTCCCCTACTCTG
AACTCCCTCCAGCTCCCCATACTCCTTCTCCTTATAACCCTGCTGTTCTC
ACTCTGGGTTCTCNATTCNTCATCCTCTGCTCTTTTTCCTCTCTCAGATC
GCCCTGACCAGGTCCAGTCTGCTGCTCATATTCAGTCTATTTTCTCTCCT
CTGGACTCTTAAACATGCCTCTCATTTACCATGGAGAGGTTATATCATCA
CTTCATACAGTCACACCAAAGAGAAAGTAATATAACACGAGAAGAGACCA
GTGTGCCCCAATATCCTCTTCAAGGGCATGACCCCAGTGGTCCAACTTCT
TTCTATTAGCCTCACCTAGGAAAAGTCCCATAGCGTCATCGGCGCAGGGG
TTTTGCGAGGCACAGAGAATCTTACTCATAACATGTAGTATGTTTGCTTG
ATCAGATAGCTTAGCTTCACCAAGTACTTGGTAGTCCTGTGACCCAGGAC
AACTTCCGTGGTTAAACTAGAAGATTCTTCTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACACTGAGATTCCACTTCACTCTAGTCAGAATGGCTAAGATCA
AAAACTCAGGTGACAGCAGATGCTGGCGAGGATATGGAGAAAGGGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAACATGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCTTTTTTTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGA
ACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGATCC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATTTACACAATGGAATACTACTCAGCTATTAAAAAATGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGT
AACCCATTCACAAAGGAACTCGCACAAAATGGACTCACTGGTAATTGTAT
ATTAGCTCAGATACTTACGATACCCAAGATATAATATACCCTTTGCCAAA
CGCATGAATTCCTGAATAACTAATATCCTAGTGTGGACACTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_l11.b1 MSMg01no406_l11.b1 CHROMAT_FILE:
MSMg01no406_l11.b1 PHD_FILE: MSMg01no406_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:07 2005
         (276 letters)



>mm_chr2_68676463_68677138
          Length = 676

 Score =  526 bits (272), Expect = e-154
 Identities = 275/276 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcctctgctctttttcctctctcagatcgccctgaccaggtccagtctgctgctcatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atcctctgctctttttcctctctcagatcgccctgaccaggtccagtctgctgctcatat 417

                                                                       
Query: 61  tcagtctattttctctcctctggactcttaaacatgcctctcatttaccatggagaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tcagtctattttctctcctctggactcttaaacatgcctctcatttaccatggagaggtt 357

                                                                       
Query: 121 atatcatcacttcatacagtcacaccaaagagaaagtaatataacacgagaagagaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atatcatcacttcatacagtcacaccaaagagaaagtaatataacacgagaagagaccag 297

                                                                       
Query: 181 tgtgccccaatatcctcttcaagggcatgaccccagtggtccaacttctttctattagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 296 tgtgccccaatatcctcttcaagggcatgaccccagtggtccaacttttttctattagcc 237

                                               
Query: 241 tcacctaggaaaagtcccatagcgtcatcggcgcag 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tcacctaggaaaagtcccatagcgtcatcggcgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)