Query= MSMg01no407_b24.b1 MSMg01no407_b24.b1 CHROMAT_FILE:
MSMg01no407_b24.b1 PHD_FILE: MSMg01no407_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:41 2005
(531 letters)
>mm_chr2_8371124_8372054
Length = 931
Score = 975 bits (504), Expect = 0.0
Identities = 515/519 (99%)
Strand = Plus / Plus
Query: 13 gaattctatgtctctgaattgtttgaatgtcgcatatggctatgaaagactttgaacatg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattctatgtctctgaattgtttgaatgtcgcatatggctatgaaagactttgaacatg 272
Query: 73 atcacaggatccttgatttttcctcttgctcttgtcatcatggatctagtagcttttgct 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atcacaggatccttgatttttcctcttgctcttgtcatcatggatctagtagcttttgct 332
Query: 133 atagtttcttacattgagactattgagcttgactccacagtttatgaactctctctagat 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atagtttcttacattgagactattgagcttgactccacagtttatgaactctctctagat 392
Query: 193 ctgcctcatgatggtgaattgaggtaccatctagatgaagaagaagccttaatggttgac 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctgcctcatgatggtgaattgaggtaccatctagatgaagaagaagccttaatggttgac 452
Query: 253 actttatgtggtataaatcttcattggtaagcttattactaaaggttcctgaactcctag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 actttatgtggtataaatcttcattggtaagcttattactaaaggttcctgaactcctag 512
Query: 313 gactgaaaagtcaagtatgacacatgcttttcacacttacctgaacttgggtgttcaaac 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gactgaaaagtcaagtatgacacatgcttttcacacttacctgaacttgggtgttcaaac 572
Query: 373 actcaagatgatgcagtgaatctgataaaagagatcgtgggaaatatccttgaacacatt 432
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 573 actcaagatgatgcagtgaatctgataaaagagatcatgggaaatatccttgaacacatg 632
Query: 433 ggcactggggaaaatttcctgaacacaaccaatggttcatcctctaagaacaacaattaa 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ggcactggggaaaatttcctgaacacaaccaatggttcatcctctaagaacaacaattaa 692
Query: 493 caaatggggcctcatgaaaccgaanagcttctataagtc 531
||| |||||||||||||||||||| ||||||||||||||
Sbjct: 693 caagtggggcctcatgaaaccgaaaagcttctataagtc 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_b24.g1 MSMg01no407_b24.g1 CHROMAT_FILE:
MSMg01no407_b24.g1 PHD_FILE: MSMg01no407_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:41 2005
(441 letters)
>mm_chr2_8565415_8566252
Length = 838
Score = 745 bits (385), Expect = 0.0
Identities = 426/441 (96%), Gaps = 3/441 (0%)
Strand = Plus / Minus
Query: 1 atataaattggtggggcatatggcatatacattttattaactcagagtttcagtcctgtt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atataaactggtggggcatatggcatatacattttattaactcagagtttcagtcctgtt 579
Query: 61 ccagcaagtgaaaggtaataataggaatattcaatattacttttcagaataattacaaat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ccatcaagtgaaaggtaataataggaatattcaatattacttttcagaataattacaaat 519
Query: 121 gtttttctcataagccatcagctttggggattattgttattcatttggatttttgctctt 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 518 gtttttctcataagccatcagctttggggattattg---ttcatttggatttttgctctt 462
Query: 181 tttttcatggcatgaggaatgttcagtaatacgacaaaaaaaactctctggttataatta 240
|||||||||||||||||||||||| |||||| || ||||||| |||||||||||||||||
Sbjct: 461 tttttcatggcatgaggaatgttcggtaataagataaaaaaacctctctggttataatta 402
Query: 241 gtacaaattttaagaaggttttcatgtttaaaaccttggagaaaatgaaactagatccca 300
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 401 gtacaaattttaaaaaggttttcatgtttaaaatcttggagaaaatgaaactagatccca 342
Query: 301 ttatattcaaaaataattgatttttgaaaacaatgtttaatatgcccttttagacaacac 360
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 341 ttatattcaaaaataattgattttcgaaaacaatgtttaatatgtccttttagacaacac 282
Query: 361 atttccttctgaaatattgataataaatactggagatcagagaataaagagggatcaaga 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 281 atttccttctgaaatattgataataaatactgcagatcagagaataaagagggatcgaga 222
Query: 421 catgagtacagtttgaaagca 441
|||||||||||||||||||||
Sbjct: 221 catgagtacagtttgaaagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 838
Length adjustment: 9
Effective length of query: 432
Effective length of database: 829
Effective search space: 358128
Effective search space used: 358128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
