BAC Information

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BAC

Clone NameMSMg01-407F11
Chromosome2 (Build37)
Map Location 163,778,141 - 163,778,810
singlet/doubletsinglet
Overlap genenone
Upstream geneL3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4
Downstream geneYwhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407F11.T7 (MSMg01no407_f11.b1)MSMg01-407F11.TJ (MSMg01no407_f11.g1)
ACCAG505323AG505324
length724742
length of high quality
(start - end)		655 (50 - 704)505 (80 - 584)
definitionCHROMAT_FILE: MSMg01no407_f11.b1 PHD_FILE: MSMg01no407_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:57 2005CHROMAT_FILE: MSMg01no407_f11.g1 PHD_FILE: MSMg01no407_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTAGTATTCATTTGAAAGGTCAACACGATATATTGATTAAT
TCAAAATTTAAAAAAAAACAATCACAACTCAGTTCAATAAAGCACTCTAC
CATCTAAATAAACAATTACAACAAATGTATAGTCCGGGAGCTGAGAGGAT
GACTCAGTAGCTAAGGATGTTTGTTGAGCAAGCATGAGAGCCTGAGTATT
CACCCCGGCACCCAGGTTACAAGCTCAGCATGCTCACACATACCTGCCGC
CCTCATGCTCTGGTGGAACGCAGGCTGAGGTGGAGTTGGGCGAAGACCAG
AGGACTGCTGGGAGCTTGCTGACTCCCAGCCTAGCTGCACATCTAAGGAG
AGACTCTGTCTCCAGAGAATAATACAGGGGGTGACAGACAAGGACACCTG
ATGTCTTCCTCTGGCCTATATATGTGTGTGCATAGGCACATACATACCTT
CACCACTTGTAACTACAACACACACACAATCAAAAAGAAATACATGCACA
GTCTGACCCCATCTATTTAAAGCTGTGTATACATATATCCTTATCCATAT
AGTTATCTATGGAAAGGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGT
TTGTTTATTTATTTAAGTGCGGGGTGCTCTCTGGAATGAAGCTCACCACG
TTAGCAATGAGATCATGGGTGACG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAAATCTACACGGGTGAC
ACTAGAGCAGACTCCTAGAGCGGACATGGATTCTCTGTTACCTGGCAAAG
TCCCCAATGGAGGGACTGGGACACCAACCTACAGTTTGTCATGCCTGCAG
GATGTGCTGGGGCAGGAACCTAGCATAATCATCATCAATGAAACCAGAGA
CTTCATGCAGCAACTGATGGGAGCGGATGCAGGATCCCACAGCCGCACAT
TAGATGGAGCTCGGGGAAGGAGGGGAGGACTGGAGGAGCCAGAGGGATCA
AGGACACTGTAACAACTGAGAACCACAGAACCAATGAGAGAGACCCAAGT
GAGCTCACCGACATCAGGGAGCCTGAATGGCTCTGACCTAGGTCCTTAGC
ATATATGCTGTAGTTGTGTAGCTTGGTGTTATTGTGGGAGTCCTAACAGT
GAGAGCCAGGCTGTCTGACTCTCTTGCCTGCCTTTGGGACCCTTTTTTCC
TACTGGGTTGCCTTATCCAGCTTTGACTTGAGAAAATGTGCCTGGTCTTA
CTGTAACTTGTTATGCCATATTTGGTCCATGTCCCTGGAAGAGAGGGNTT
TTCTTCTTNTTACATATACTCTTATCTTATTTTCTTATTCGATTCATCTT
TTTTCTTTTCTCTGCTTTATTTCTGAGATTATATATAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_f11.b1 MSMg01no407_f11.b1 CHROMAT_FILE:
MSMg01no407_f11.b1 PHD_FILE: MSMg01no407_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:57 2005
         (655 letters)



>mm_chr2_163777948_163779002
          Length = 1055

 Score = 1122 bits (580), Expect = 0.0
 Identities = 640/670 (95%), Gaps = 19/670 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctagtattcatttgaaaggtcaacacgatatattgattaattcaaaatttaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 194 gaattcctagtattcatttgaaaggtcaacacgatatattgattaattcaaaattaaaaa 253

                                                                       
Query: 65  aaaaa-caatcacaactcagttcaataaagcactctaccatctaaataaacaattacaac 123
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaaaaacaatcacaactcagttcaataaagcactctaccatctaaataaacaattacaac 313

                                                                       
Query: 124 aaatgtatagtccgggagctgagaggatgactcagtagctaaggatgtttgttgagcaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aaatgtatagtccgggagctgagaggatgactcagtagctaaggatgtttgttgagcaag 373

                                                                       
Query: 184 catgagagcctgagtattcaccccggcacccaggttacaagctcagcatgctcacacata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 catgagagcctgagtattcaccccggcacccaggttacaagctcagcatgctcacacata 433

                                                                       
Query: 244 cctgccgccctcatgctctggtggaacgcaggctgaggtggagttgggcgaagaccagag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cctgccgccctcatgctctggtggaacgcaggctgaggtggagttgggcgaagaccagag 493

                                                                       
Query: 304 gactgctgggagcttgctgactcccagcctagctgcacatctaaggagagactctgtctc 363
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 494 gactgctgggagcttgctgactcccagcctagctgcacacctaaggagagactctgtctc 553

                                                                       
Query: 364 cagagaataatacagggggtgacagacaaggacacctgatgtcttcctctggcctatata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cagagaataatacagggggtgacagacaaggacacctgatgtcttcctctggcctatata 613

                                                                       
Query: 424 tgtgtgtgcataggcacatacataccttcaccacttgtaactacaaca----------ca 473
           ||||||||||||||| |||||||||||||||||||| |||||||||||          ||
Sbjct: 614 tgtgtgtgcataggcgcatacataccttcaccacttataactacaacatacacacacaca 673

                                                                       
Query: 474 cacacaatcaaaaagaaatacatgcacagtctgaccccatctatttaaagctgtgtatac 533
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 674 cacacaatcaaaaagaaatacatgcgcagtctgaccccatctatttaaagctgtgtatac 733

                                                                       
Query: 534 atatatccttatccatatagttatctatggaaaggcctgtgtgtgtgtgtgtgtgtgtgt 593
           | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 acatatccttatccatataattatctatggaaaggcctgtgtgtgtgtgtgtgtgtgtgt 793

                                                                       
Query: 594 gtgt-t-------tgtttgtttatttatttaagtgcggggtgctctctggaatgaagctc 645
           |||| |       ||||| ||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 794 gtgtgtgtgtgtgtgtttatttatttatttaagtgcggggtgctttctgtaatgaagctc 853

                     
Query: 646 accacgttag 655
           ||||| ||||
Sbjct: 854 accacattag 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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