BAC Information

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BAC

Clone NameMSMg01-407J08
Chromosome2 (Build37)
Map Location 48,346,346 - 48,495,618
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383691, LOC100041457
Downstream geneLOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407J08.T7 (MSMg01no407_j08.b1)MSMg01-407J08.TJ (MSMg01no407_j08.g1)
ACCAG505508AG505509
length758757
length of high quality
(start - end)
530 (46 - 575)480 (78 - 557)
definitionCHROMAT_FILE: MSMg01no407_j08.b1 PHD_FILE: MSMg01no407_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:16 2005CHROMAT_FILE: MSMg01no407_j08.g1 PHD_FILE: MSMg01no407_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,495,092 - 48,495,618)(48,346,346 - 48,346,825)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACTCCCAGCATCTCAGCATGGGGATCAGATACTGTCTTAGTCTT
GTGCTTCCCAGCTTCTAGAACAAATAAGTGTTTATTTCAACTTCTCTGCC
AATGGCTTTTTATTTTAGCAACCCAAACTGCAAACTGACCAAAACAATGA
CTCAGAAAGTGTTTATTTATTTACGTGACGATTTTGCAGGTTGATGATCT
GGGGTGTGCACAGCTTGGCTGCTTCAATGTTGAGAGCCAGCTTCATTGCT
CTTGGCTGAGATCATTCAGGCACTGCAACTGAGTACTTCATCAGTTGGGT
CCGACTGGCTTGTGCTGGGTTGTTTTACACTTTCTCTACATGATTACTTA
CTTCCCAGGACTCGATCATGTAATAACAGTTCATGAGTTCCAAAAGAATG
AGTGAAAACAAGCAAGGTTTCTGGTACAAGGGTGCAGCTGTTTCTGTCTA
TTGGCCAGAACAAGTTGCAATCTCAGTTCAGATTCTAGGACTGAAAGATA
AACTTCACTTTTTCATGAATTCAAGAGCATATGGGAAAATTTGCAGCCTA
TGTTTTTGTAATCTACCATCACAGATACCTAACCTTTACATTAAAGGAGA
AATGAAGAGAGAATCTAGGCTCTACAGAAACAAAAAATCTGATCCCCTTC
TGGAAAGCAGGAACTGAGAAAATTATTTGTTTATTTAAAAAAAACGCGAA
TCAAATCC
CTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGC
TGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAG
ATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGG
AACACTCCACCATACCTGTTCTGTTGAGGATAACTAAGGACCAAAGGTCT
CACGTTCCCTAACACTTAAGTAGGCACTCAAGAAGAAAACTAGGGGCCCA
ACCAATGGTCAGGACTCTCTCCCTCTGGCAACTTTCTTTCCACATGTACC
TCACACAGCACCAGGGAAATAAATTAATAAAGTCTTTGCAATGCTGCAGT
ATGAGCTCAGAAGAAACTGCACTTCACCTTCTGATCCTGATTATCCCCTA
AGGAAAGCGCGCACATACATCTGTCCGTTTCAGTGCTGGGTGCAGCACCA
AGCTCCTAGTCAAACATATACTTGTTTGTGAGGAGAAATAGCCGATATTC
TTCAGTGGGCTATGGCCCTAACCTATGCTATAAGAAAGGTAAAAAAAGTA
ACTTGCCCTCCCCCGAATATTGGATGGGCCACCCGAAATATAAAGAAAAG
GGGGGTTGGGCTCCCCCGGTGGAAAAAATTTTATCCTCGGCTTCCGGGTT
CCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_j08.b1 MSMg01no407_j08.b1 CHROMAT_FILE:
MSMg01no407_j08.b1 PHD_FILE: MSMg01no407_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:16 2005
         (530 letters)



>mm_chr2_48494838_48495767
          Length = 930

 Score = 1011 bits (523), Expect = 0.0
 Identities = 526/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccactcccagcatctcagcatggggatcagatactgtcttagtcttgtgcttcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ggaattccactcccagcatctcagcatggggatcagatactgtcttagtcttgtgcttcc 722

                                                                       
Query: 64  cagcttctagaacaaataagtgtttatttcaacttctctgccaatggctttttattttag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cagcttctagaacaaataagtgtttatttcaacttctctgccaatggctttttattttag 662

                                                                       
Query: 124 caacccaaactgcaaactgaccaaaacaatgactcagaaagtgtttatttatttacgtga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caacccaaactgcaaactgaccaaaacaatgactcagaaagtgtttatttatttacgtga 602

                                                                       
Query: 184 cgattttgcaggttgatgatctggggtgtgcacagcttggctgcttcaatgttgagagcc 243
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cggttttgcaggttgatgatctggggtgtgcacagcttggctgcttcaatgttgagagcc 542

                                                                       
Query: 244 agcttcattgctcttggctgagatcattcaggcactgcaactgagtacttcatcagttgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agcttcattgctcttggctgagatcattcaggcactgcaactgagtacttcatcagttgg 482

                                                                       
Query: 304 gtccgactggcttgtgctgggttgttttacactttctctacatgattacttacttcccag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtccgactggcttgtgctgggttgttttacactttctctacatgattacttacttcccag 422

                                                                       
Query: 364 gactcgatcatgtaataacagttcatgagttccaaaagaatgagtgaaaacaagcaaggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gactcgatcatgtaataacagttcatgagttccaaaagaatgagtgaaaacaagcaaggt 362

                                                                       
Query: 424 ttctggtacaagggtgcagctgtttctgtctattggccagaacaagttgcaatctcagtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttctggtacaagggtgcagctgtttctgtctattggccagaacaagttgcaatctcagtt 302

                                                          
Query: 484 cagattctaggactgaaagataaacttcactttttcatgaattcaag 530
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cagattctaggactgaaagataaacttcactttttcatgaattcaag 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no407_j08.g1 MSMg01no407_j08.g1 CHROMAT_FILE:
MSMg01no407_j08.g1 PHD_FILE: MSMg01no407_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:16 2005
         (480 letters)



>mm_chr2_48346146_48347025
          Length = 880

 Score =  913 bits (472), Expect = 0.0
 Identities = 478/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgaggaatactgaatggctgagaagcacctgaaaaaatgttcaacatccttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctgaggaatactgaatggctgagaagcacctgaaaaaatgttcaacatccttaatc 260

                                                                       
Query: 61  atcagggaaatgcaaatcaaaacaaccctgagattccacttcactccagtcagaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagggaaatgcaaatcaaaacaaccctgagattccacttcactccagtcagaatggct 320

                                                                       
Query: 121 aagatcaaaaactcaggtgacagcagatgctggcgaggatgtggagaaaggggaacactc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatcaaaaactcaggtaacagcagatgctggcgaggatgtggagaaaggggaacactc 380

                                                                       
Query: 181 caccatacctgttctgttgaggataactaaggaccaaaggtctcacgttccctaacactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccatacctgttctgttgaggataactaaggaccaaaggtctcacgttccctaacactt 440

                                                                       
Query: 241 aagtaggcactcaagaagaaaactaggggcccaaccaatggtcaggactctctccctctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtaggcactcaagaagaaaactaggggcccaaccaatggtcaggactctctccctctg 500

                                                                       
Query: 301 gcaactttctttccacatgtacctcacacagcaccagggaaataaattaataaagtcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaactttctttccacatgtacctcacacagcaccagggaaataaattaataaagtcttt 560

                                                                       
Query: 361 gcaatgctgcagtatgagctcagaagaaactgcacttcaccttctgatcctgattatccc 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaatgctgcagtatgagctcagaagaaactgcacttcaccttctgatcctgattatccc 620

                                                                       
Query: 421 ctaaggaaagcgcgcacatacatctgtccgtttcagtgctgggtgcagcaccaagctcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaaggaaagcgcgcacatacatctgtccgtttcagtgctgggtgcagcaccaagctcct 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)