Query= MSMg01no407_l10.b1 MSMg01no407_l10.b1 CHROMAT_FILE:
MSMg01no407_l10.b1 PHD_FILE: MSMg01no407_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:26 2005
(545 letters)
>mm_chr2_158386308_158387253
Length = 946
Score = 1025 bits (530), Expect = 0.0
Identities = 539/542 (99%), Gaps = 1/542 (0%)
Strand = Plus / Minus
Query: 5 gaattc-aaacaaacctggactggaaggggagctgtgaggaggcccgggctgctgacagg 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaattcaaaacaaacctggactggaaggggagctgtgaggaggcccgggctgctgacagg 687
Query: 64 ctgttgaagggccagccagggctggaaacaagataggcagaatgaggccatctcctgggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctgttgaagggccagccagggctggaaacaagataggcagaatgaggccatctcctgggg 627
Query: 124 ctgcagagaggcttgtgtgcagcgctggcctcgctcctgcaaaggtcctccaggcccgag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctgcagagaggcttgtgtgcagcgctggcctcgctcctgcaaaggtcctccaggcccgag 567
Query: 184 gaagagcagggctggggtgagagacaggtcatactggagaagacgggacggggaccgctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaagagcagggctggggtgagagacaggtcatactggagaagacgggacggggaccgctt 507
Query: 244 gaagctgccagggccttgcattgtgggaagagcaagaactgacagacccagggtctggag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaagctgccagggccttgcattgtgggaagagcaagaactgacagacccagggtctggag 447
Query: 304 aactggaagcagcctgtctgagggacctggggattggatagtgggtgggatctagggaga 363
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 446 aactggaagcagcctgtctgagggacctggggattggatagtgggtgggacctagggaga 387
Query: 364 tgtaacaatgcatgcctgagcatcagagtgagccagcgagatccaacttcctgcagaaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtaacaatgcatgcctgagcatcagagtgagccagcgagatccaacttcctgcagaaag 327
Query: 424 ccctgtgctgttggtgaacatgatccaccccggagcccagactccaggatccgcacacat 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 326 ccctgtgctgttggtgaacatgatccaccccggagcccagactccaggatctgcacacat 267
Query: 484 cttcccaggagcaagacggttgaacctgcagaagtgggtatcctaacttctatttctttg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttcccaggagcaagacggttgaacctgcagaagtgggtatcctaacttctatttctttg 207
Query: 544 tt 545
||
Sbjct: 206 tt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space: 500760
Effective search space used: 500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_l10.g1 MSMg01no407_l10.g1 CHROMAT_FILE:
MSMg01no407_l10.g1 PHD_FILE: MSMg01no407_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:26 2005
(237 letters)
>mm_chr2_158250796_158251432
Length = 637
Score = 406 bits (210), Expect = e-118
Identities = 231/248 (93%), Gaps = 16/248 (6%)
Strand = Plus / Plus
Query: 1 acttaaacattctaggctttgatgtctgtagactttagttttacttttcttttccaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acttaaacattctaggctttgatgtctgtagactttagttttacttttcttttccaagtt 244
Query: 61 gggagattttttttttcttctttttagtat----------------cttagtatgtgttt 104
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 245 gggagattttttttttcttctttttagtatcttatttcttatagcacttagtatgtgttt 304
Query: 105 gaggtggtcagatggtatgactagatgcctagttaagaccatacccatgcggtccttctt 164
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gagatggtcagatggtatgactagatgcctagttaagaccatacccatgcggtccttctt 364
Query: 165 catctctgtaagttctcacctgttcattctagtgttgtgggttgttttgttttgttttgt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catctctgtaagttctcacctgttcattctagtgttgtgggttgttttgttttgttttgt 424
Query: 225 tttgtttt 232
||||||||
Sbjct: 425 tttgtttt 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
