BAC Information

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BAC

Clone NameMSMg01-407M18
Chromosome2 (Build37)
Map Location 107,723,699 - 107,724,129
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078, LOC668790, LOC623003, LOC100043423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407M18.T7 (MSMg01no407_m18.b1)MSMg01-407M18.TJ (MSMg01no407_m18.g1)
ACCAG505668AG505669
length764781
length of high quality
(start - end)
562 (43 - 604)431 (74 - 504)
definitionCHROMAT_FILE: MSMg01no407_m18.b1 PHD_FILE: MSMg01no407_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:33 2005CHROMAT_FILE: MSMg01no407_m18.g1 PHD_FILE: MSMg01no407_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCTATACCTAAACATTGTAAAAGCAATATACAAAAAACTAGTAA
CCAACATAAAACTAAATGGGGAGAAATATGAAGGAATCCAACTAAAATCA
GGAACTAGAGAAGGCTCCCCACTTCCTCCCTATCTATTAAATATAGTACT
AGAAATCCTCGTCAGAGCAATTAAACAACAAAGGAAGGTCAAAGGGATAC
AAACTGGAAAAGAAGAAGTCAAAATATCACTATTTGCAGAGGATAAGATA
ATATACTTAAGTGACCCAAAAAAATTCCACCAGAGAACACCTAAACCTGA
TAAACAACTTCAGCAAAGTGGCTGGATATAAAATAAACTCAAGCAAATCT
GTAGCATTCCTCTACTCAAAGGATAAATAGGCTGAGAAAGAAATTAACGA
AAGACACCCTTCACAATAGTCACAAATAATATAAAATACCTTGGAATGAC
TCAAACTAAGCAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGA
AGAAAGAAATCAAAGATGTCAGTAGATGGAAAGATCTCCCATGCTAATGG
ATTGGTAGAATTGATATAGTANAACTGACCATCTTGCTGAAGGCAATCTA
CAGATTCAATGCAATTCCCATCAAAATTCCCACTCATTCTTCACAGAGTT
AGAAAGAATAATTTGCAAATTCTTTGGGATAACAAAACCAAAACCAAACC
AAAACCAAACCTAA
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACTCAACATTGAATTGTAAATTTTTC
CTGCAATATAAAAAATATAAAAAGACTCTTGTTATGCAAAAGCTTCATTT
GTATGATTGTCTATGTGGAAAATTAGATGTACCCTACAATAAAATCATTA
AAACTAACAAATGAGTTAAACAAGGATGGAGGGCACAAGATGAACTGTTT
TGTAAAGACGAATTGAATTTCTACGTACTAACAATACACATATATAAATG
AAAGAAATCACCAATTATTATAGCAACAAAACTGGAATAGTTAGGTATAA
ATGTACAGAAATCACATAATGCCTATAGAATTCTTAAGCATCCTTGAAAG
CAATTTTAAAAACTAAAAATGATTCATGAGTTGAAAGGTTCAGTATTGTC
AGTTTATATGTAGCTCCAATACTATCTCAAGCAAACTCATAGCCATTTTT
ATAGAAATAGAAATGTGTTTATTATGGGACGACAAAGGAACTGGAATAGC
TAACAAACATAAGGGGGAGCAGGAAGTTGCAACACTGACCTTGGCTCAGG
AAAGAACTCACGTTTTTTATTAATAAAGCAAGGTTGGTAAGGCTTGTCCC
TATTTCCCAAACCAATAAACCTAAAGTAAAACCCCTTTATCCAAAAATAA
AAAAAGGGCGGTATCTTCCCTCTTATAAGGGCTTTGTGGAATTCATATAA
GACCCTTTATTCCTTCCACACCCCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_m18.g1 MSMg01no407_m18.g1 CHROMAT_FILE:
MSMg01no407_m18.g1 PHD_FILE: MSMg01no407_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:33 2005
         (431 letters)



>mm_chr2_107723499_107724329
          Length = 831

 Score =  818 bits (423), Expect = 0.0
 Identities = 429/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactcaacattgaattgtaaatttttcctgcaatataaaaaatataaaaagactcttgtt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactcaacattgaattgtaaaattttcctgcaatataaaaaatataaaaagactcttgtt 260

                                                                       
Query: 61  atgcaaaagcttcatttgtatgattgtctatgtggaaaattagatgtaccctacaataaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcaaaagctttatttgtatgattgtctatgtggaaaattagatgtaccctacaataaa 320

                                                                       
Query: 121 atcattaaaactaacaaatgagttaaacaaggatggagggcacaagatgaactgttttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcattaaaactaacaaatgagttaaacaaggatggagggcacaagatgaactgttttgt 380

                                                                       
Query: 181 aaagacgaattgaatttctacgtactaacaatacacatatataaatgaaagaaatcacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagacgaattgaatttctacgtactaacaatacacatatataaatgaaagaaatcacca 440

                                                                       
Query: 241 attattatagcaacaaaactggaatagttaggtataaatgtacagaaatcacataatgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attattatagcaacaaaactggaatagttaggtataaatgtacagaaatcacataatgcc 500

                                                                       
Query: 301 tatagaattcttaagcatccttgaaagcaattttaaaaactaaaaatgattcatgagttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatagaattcttaagcatccttgaaagcaattttaaaaactaaaaatgattcatgagttg 560

                                                                       
Query: 361 aaaggttcagtattgtcagtttatatgtagctccaatactatctcaagcaaactcatagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggttcagtattgtcagtttatatgtagctccaatactatctcaagcaaactcatagc 620

                      
Query: 421 catttttatag 431
           |||||||||||
Sbjct: 621 catttttatag 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)