Query= MSMg01no408_k22.b1 MSMg01no408_k22.b1 CHROMAT_FILE:
MSMg01no408_k22.b1 PHD_FILE: MSMg01no408_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:44 2005
(437 letters)
>mm_chr2_16665639_16666477
Length = 839
Score = 779 bits (403), Expect = 0.0
Identities = 430/445 (96%), Gaps = 12/445 (2%)
Strand = Plus / Minus
Query: 5 gaattcctcaacattttatatatttcttgcttttcgtactttagtttttcttcatttgaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaattcctcaacattttatatatttcttgcttttcgtactttagtttttcttcatttgaa 395
Query: 65 agttgtcttttagatgatctagaaatattagcaataaataccactggctcagatacaaat 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 394 agttgtcttttagatgatctagaaatatgagcaataaataccactggctcagatacaaat 335
Query: 125 gagagtatccaaaaatatccattaacaatgacaaaatcatgcagcatgt--tttttttcc 182
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 334 gagagtatccaaaaatatccattaacaatgacaaaatcatgcagcatgttatttttttcc 275
Query: 183 tttaaagctaatgtattgaaagtataaagaaaatgagtttccattggctactaagttaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tttaaagctaatgtattgaaagtataaagaaaatgagtttccattggctactaagttaaa 215
Query: 243 tagacttttcatttattttttatttataattcttcccctgtttctctctctctgtctctc 302
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 214 tagacttttcatttattttttatttataattcttcccctgtttctctgtctctgtctctc 155
Query: 303 tatgtgtgtgtgtgttcttttgagaggccaaaagagagtgagtgtcatatcccctaggag 362
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tatgtgtgtgtatgttcttttgagaggccaaaagagagtgagtgtcatatcccctaggag 95
Query: 363 cccctaggag---cta-------aagttccagggagctgtgatatgcctggcctgggtgc 412
|||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 94 cccctaggagcccctaggagctgaagttccagggagctgtgatatgcctggcctgggtgc 35
Query: 413 tgagaccaaacctagtccctttgca 437
|||||||||||||||||||||||||
Sbjct: 34 tgagaccaaacctagtccctttgca 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 839
Length adjustment: 9
Effective length of query: 428
Effective length of database: 830
Effective search space: 355240
Effective search space used: 355240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_k22.g1 MSMg01no408_k22.g1 CHROMAT_FILE:
MSMg01no408_k22.g1 PHD_FILE: MSMg01no408_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:44 2005
(490 letters)
>mm_chr2_16469087_16469976
Length = 890
Score = 948 bits (490), Expect = 0.0
Identities = 490/490 (100%)
Strand = Plus / Plus
Query: 1 aaatagaagtagattttaataatccaaattaagcaattatctgaatttctagaatcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatagaagtagattttaataatccaaattaagcaattatctgaatttctagaatcattc 260
Query: 61 actagtagaggccccaatataatttttttaaagaatgaatgaatttttgtcactaactat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actagtagaggccccaatataatttttttaaagaatgaatgaatttttgtcactaactat 320
Query: 121 aattatatagttcaaatcctcattaaatatttctaaatcaagcatttttgtcttgttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattatatagttcaaatcctcattaaatatttctaaatcaagcatttttgtcttgttatc 380
Query: 181 agttacatctcaatgattgatattatgatcaaaaagaaaacatattgtgcacaaagttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttacatctcaatgattgatattatgatcaaaaagaaaacatattgtgcacaaagttat 440
Query: 241 aatttgcttctaagcttttttatatttaaatgtttcttctaaagagcatgacttatgcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttgcttctaagcttttttatatttaaatgtttcttctaaagagcatgacttatgcta 500
Query: 301 cgtgtataatttcattttaactcactgtcctgcatctacttgagtcatttgttagtgtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtgtataatttcattttaactcactgtcctgcatctacttgagtcatttgttagtgtga 560
Query: 361 aggtcactgctacctttagtcatagaagaattatttaagaaagtaaaattatagaaactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtcactgctacctttagtcatagaagaattatttaagaaagtaaaattatagaaactt 620
Query: 421 tcctgctgttaatgctcctctttgtctaccaatgcaggaggacacggatcacaattacta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctgctgttaatgctcctctttgtctaccaatgcaggaggacacggatcacaattacta 680
Query: 481 catttctcgg 490
||||||||||
Sbjct: 681 catttctcgg 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
