BAC Information

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BAC

Clone NameMSMg01-408M13
Chromosome2 (Build37)
Map Location 118,458,753 - 118,459,162
singlet/doubletsinglet
Overlap geneBub1b
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461
Downstream genePak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408M13.T7 (MSMg01no408_m13.b1)MSMg01-408M13.TJ (MSMg01no408_m13.g1)
ACCAG506422AG506423
length769762
length of high quality
(start - end)		418 (40 - 457)496 (71 - 566)
definitionCHROMAT_FILE: MSMg01no408_m13.b1 PHD_FILE: MSMg01no408_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:52 2005CHROMAT_FILE: MSMg01no408_m13.g1 PHD_FILE: MSMg01no408_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCTTTATTTTTTTTTTAGAATTCTAAAGCCTTATTTTATAACTGTGCTT
GGTTTTGTTTGTTTTCTTACTGTTATCTGGTTGACTGGTTTCTTGGTGTA
TTTTCCCGCACAGTTTTAGAACCTGAATATAGACATTACTTAGGCAAACG
CAGCACCACCGAGGCGTGTCCTCAGCTCCTCACCTTGCCTTTGAAGTCTT
TGCCATCCTGATGTTTGTTTGGTTTTTGTTTTTGTTTTTAAGCTCAGCAG
AGCAATTTTGTTTGCAAGATGATGTGCTGCTCGACCCCAAAGCACGCACA
CCCCGTCACAGATGCTCTCTGGGCGTTAGTGGCGATGTGGTGACTGTGTC
TTTTCTCGGCTGGCCGGNGCCCAGCCTCATAGTCTTTAGCTTTTGGCTAG
TGTACGAAGGGACGAATGAAAGGGGGTCAGGAGTCTGCCACTGTGTTTCT
CAGGTTCTACAAGGGCATTGGGGTTTTTTTTGTTAACAGAAACTTACCCT
GCGTTACGTCCTTCCACCCTTTGGCGGAAACATAAAATTATATTTCTTAT
TTCGGCCGTCTTCTATTCTTCTATCTCCCTGTCTTTTTTCCCGCCCTATT
CGCTTTAATTTTTTATTTTCCTTTTCCCGCTTTTTTTCTTTTTTCCGTTC
CTATTCCCCACCCCTTTTTCCACTAGTCGCTCTAGTTTTGCGCGCTAATC
CTTTCTTCTTATCTTCCCG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAGGCCAGTGTCTTAGGATGCTGTGATGAA
ACACCCTGACCAAAAACTACTTGGGTGTGAAAGTGTTTATTTCAATTATA
CTTCCATATCACATCATCACTGAAGGCAGTCAGGGCAGGGACTCAAGGTA
TGGTAGGAACTAGGAGACAAAAGATGCAGAGGCCATGAAGGAGCACTGTT
CCCACAATGGGCCCTCCCCATTACTAATTAAGAAAATGTTACAGACTTGT
CTATAGTCCGATCTTATGGAGGCATTTTCTCAGTGAGGTGCCCTCCTCTC
AGATGACTCTAGCTTGTGTGACATTGATGTAAAAGCTAGCTAGCACAGCC
AGACTGGATGACGGGATGAGTCCTTGTCTCAAAAAATAATTGTAAAGGCC
AGTGAGCTGGCTCAGTGAGTAGAGGCACTTGCCTACAAGCCTGCTGACCT
GATACATATTATGGAGAATTACTGCCATGGTCCCGTCTCCAACACAGGTT
ATTACATATGTGTTCCCCATAAACCATAAATTAACAAATTAAGAGGATTT
TTTAAAGCACCCTCTTGCTTGTTTTTAGTTGATAACTAAGGTTTTTGTTT
GTTGGTTTGTTTGCCATCCCCACCTTTATCACTTCCTCTAACTTCATCTT
TATTTTCTACTCTTTTCTTCCTTTTGCCTATTTCCCCTCTTTATTGCTCT
TATTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_m13.b1 MSMg01no408_m13.b1 CHROMAT_FILE:
MSMg01no408_m13.b1 PHD_FILE: MSMg01no408_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:52 2005
         (418 letters)



>mm_chr2_118458545_118459362
          Length = 818

 Score =  756 bits (391), Expect = 0.0
 Identities = 405/410 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctttattttttttttagaattctaaagccttattttataactgtgcttggttttg 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctttattttttttttagaattctaaagccttattttataactgtgcttggttttg 268

                                                                       
Query: 69  tttgttttcttactgttatctggttgactggtttcttggtgtattttcccgcacagtttt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tttgttttcttactgttatctggttgactggtttcttggtgtattttcccgcacagtttt 328

                                                                       
Query: 129 agaacctgaatatagacattacttaggcaaacgcagcaccaccgaggcgtgtcctcagct 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agaacctgaatatagacattacttaggcaaacgcagcaccaccgaggcgtgtcctcagct 388

                                                                       
Query: 189 cctcaccttgcctttgaagtctttgccatcctgatgtttgtttggtttttgtttttgttt 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cctcaccttgcctttgaagtctttgccatcctgatgtttgtttggtttttgtttttgttt 448

                                                                       
Query: 249 ttaagctcagcagagcaattttgtttgcaagatgatgtgctgctcgaccccaaagcacgc 308
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 449 ttaagctcagcagagcaattttgtttgcaagaggatgtgctgctcgaccccaaagcacgc 508

                                                                       
Query: 309 acaccccgtcacagatgctctctgggcgttagtggcgatgtggtgactgtgtcttttctc 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 acaccccgtcacagatgctctctgggcgttagtggcgatgtggtgactgtgtcttttctc 568

                                                             
Query: 369 ggctggccggngcccagcctcatagtctttagcttttggctagtgtacga 418
           ||||||  || | |||||||||||||||||||||||||||||||||||||
Sbjct: 569 ggctggttggggtccagcctcatagtctttagcttttggctagtgtacga 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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