BAC Information

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BAC

Clone NameMSMg01-409C06
Chromosome2 (Build37)
Map Location 136,059,737 - 136,059,935
singlet/doubletsinglet
Overlap genePak7
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788, Plcb4, 6330527O06Rik
Downstream geneLOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409C06.T7 (MSMg01no409_c06.b1)MSMg01-409C06.TJ (MSMg01no409_c06.g1)
ACCAG506696AG506697
length880564
length of high quality
(start - end)
199 (70 - 268)---
definitionCHROMAT_FILE: MSMg01no409_c06.b1 PHD_FILE: MSMg01no409_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:23 2005CHROMAT_FILE: MSMg01no409_c06.g1 PHD_FILE: MSMg01no409_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATT
CCTTTCTTTTAACATTAGATATGGATTACCTTATAGCATTTTACAATTTA
ATTTTTGACAAGTTCATATGTGTATATGATGATATTCACTTCATAACATT
CTTCCATCCCTTCCTGTTCCTGCTTCCTAAATATTTAGTCTCTCTTCCTC
TTTCATGTGTGAATGCTTGCCTGGGTATTTGAGTGTAGGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTTATACTTTTTATTTTATGTGTATAAATGAATG
TCGTGGGGAAGTCAACATTTTACTCATTTCCGACCACAGAGGACCTAATC
TGAACCTTTTTTTTTTTTTCCCCCCTCGCAAGCAATCTGTTCCATTTATA
TATAAGAGAATTACCCATTATGTCCACCTTTGATTTTCGCTAGCATTTAT
TGTCTTACTTCTCTTTCTTTCTCTTCACCACTATCACCATTTGCCTTTAA
ACTTAATATTACATATACAATCCCTTATAATTTAATTATTATTTCGTTCT
TCTTAATATTATATTACTCTTCCATTCATTCAAACCTTAAACACCATTCT
TTTACCCATCATATTACTTATATCTCAATCTCTTGATTCTGCTTATCACC
ATTTGTATATTTCTATCCCCTTATCATTTCCAATTATCTCACGACTCCTT
ATTAACAACTACTATTCATCACATAATCTATTCTATATATTTCATTTTTA
TCCTATATTATACTACCAACTTCACTTCTCACCTCTTATCCTAACTGTTT
TAATCTAAATCTTTTTCTTCATATCACCATCCTCTATACCCATCCATATT
CACCCTTTACTTTAATCACACCATACTATG
TATATTNNTTTTCTAAAAAAAAAAGAATAAATTTATATATGAATTTCCTT
TAAGCCGCTTCCTATTGAGGCAGGAAAAGAACCCGACAAAAAAAAAATAA
CCACCAAAAAANNGGAAAAAAAAAACAAAGAATGGGTAGCCTGGGGCCGC
CTGGCCTTCTAAATAAGTGAACTATAGAAGATTTCCAAAACCGGTAGAAG
ATTTTTTTCCGAAAACCAAAAGTTCCCGCTAACCTCAAAAAAAATCCATT
TCCCTTCCAAAAAAAGGCCCTTTAAACCCCTAATTGGAAAATTTTTGAAA
AAAAACCCCCCCCCGTGGGGGCTTAATAAAAAAAAGTGGAAAAAAAAAAA
AGTTTGTCCCNCACCCCCCCTTTTAAAAANAAAANNNNTNNTAAAAAAAN
CTCTCTCGCCCCCTTCAATTTTTTTTTTTCCNNNNNNNNNNNNNNNNNAN
NNNNNNAAAAAANNNNAAANNAAAAATCAGCTAAAGTNNAGAAGANNNNN
NAGAAAAAAGAAAGGNGAAAGACCCNAAAGGAAAATTTTTAGATTTTNNN
AAAACCAAGAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_c06.b1 MSMg01no409_c06.b1 CHROMAT_FILE:
MSMg01no409_c06.b1 PHD_FILE: MSMg01no409_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:23 2005
         (199 letters)



>mm_chr2_136059567_136060165
          Length = 599

 Score =  302 bits (156), Expect = 1e-86
 Identities = 189/200 (94%), Gaps = 2/200 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatggattaccttatagcattttacaatttaatttttgacaagttcatatgtgtatatga 60
           |||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||
Sbjct: 369 tatggattaccttataactttttacaacttaatttttgacaagttcatatatgtatatga 310

                                                                       
Query: 61  tgatattcacttcataacattcttccat-cccttcctgttcctgcttcctaaatatttag 119
           ||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 309 tgatattcacttcataacactcttccatcccctccct-ttcctgcttcctaaatatttag 251

                                                                       
Query: 120 tctctcttcctctttcatgtgtgaatgcttgcctgggtatttgagtgtaggtgtgtgtgt 179
           |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct: 250 tctctcttcctctttcatgtgtgaatgcttgcctggatatttaagtgtagatgtgtgtgt 191

                               
Query: 180 gtgtgtgtgtgtgtgtgtgt 199
           ||||||||||||||||||||
Sbjct: 190 gtgtgtgtgtgtgtgtgtgt 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)