BAC Information

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BAC

Clone NameMSMg01-409H15
Chromosome2 (Build37)
Map Location 59,167,025 - 59,295,494
singlet/doubletdoublet
Overlap genePkp4, LOC625354
Upstream geneAcvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
Downstream gene2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409H15.T7 (MSMg01no409_h15.b1)MSMg01-409H15.TJ (MSMg01no409_h15.g1)
ACCAG506952AG506953
length795868
length of high quality
(start - end)		422 (52 - 473)143 (77 - 219)
definitionCHROMAT_FILE: MSMg01no409_h15.b1 PHD_FILE: MSMg01no409_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:51 2005CHROMAT_FILE: MSMg01no409_h15.g1 PHD_FILE: MSMg01no409_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,295,098 - 59,295,494)(59,167,025 - 59,167,167)
sequence
NTTGGGTCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTACATCTTGATCCAGAGGCAGCCAGGATCTTCCTCCACT
GGGTGGAGCTTGTACTGATATATAAGCTCTCAACGCCTACCTCCACAGTG
ACACACTTCCTCCAACAAGACCACAACTAGTCTAACAAGACCTTACCTTC
TAATAGTGCCATTCCCTATGGTCCAAACCATCAAATACATGAATCTATGG
GAGCCATACCTATTCAAATCACCACAAATTGATATCCTGAAAATGATAGT
CATAGAAAAAAATTCACATAAACTGTGCCATTGGGGTGCTATGGTTTGAA
TATCATTCAATTATTTAGTCATGTCCACAAAGGATCTATTACGATTGAAA
GCTTGTGTCTCAAACTATTCAAATAACAAAACCTTTGAAAGTAAACCCTG
GCAGGGATCCTTCTGTCTTAAGGGTGTGACTTTGGAAGGGATTACAGGAT
CTCAGTATCTTTCTTTGACTTCTAATTTGGCATAACATTTATAAGACAAC
TGCTCCATATAATGCCTTTTACACAACTATATGGATCTTTCTCCCGGTTC
CTTTTACTCCCTTTTTCGGGCGAACTTACTTATTTCATTGGTTGTTATCA
TTTCATTGGGTCTGCCCGTTGATAATCTTATCCCGCCATTTTACCCCACA
TTTTTAATTATCACCTATATATCACCTTTTTACCACTCTACCTATCATCC
TTCCTTTTACCTAATTTACCGCCGCCGTACCCAATCTTATTACCT

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGATCCTGAGTACTTCAAATT
AAAGAATTTCCTAGATTTTTAAAAATATTTGCACTTTACTAAACTATCTC
AGATTTGGGGCTTTTATAATACTCAGCCTATATAGTGGTTGAGAGGAGAT
GGTATAAGTTTAATAAGTCGAAGGGTGTAGGGTTGGTAGATTTATTGGTG
GGGTGTTTTTTTTTGTGGTGTTAGTGGGGTTAGGTTTTGGTTCGGTTTTT
GCTTGGGAGGGGCGCGACGCGGATTTTTTTTTTTTAGGCGGACAGAGGGG
GAGAGGTTTGTGTAGATTTTTTTCTCCCTCCCGCGTTTGTTAGGGTGTAG
GGTATGTGCGAATTGGTTTTTTAGTGTGCCCCCTCATTTTTTTGTTTTCT
TAGCGTTTGGCGTTCTTTTTGTGTGTGTGCTTTTTGTCTATTCATCTAAT
AGGATCGAGTTGTGTTGTGTTATTCATTTAAGATAGTGTTTCTCTCTGGT
GCGCAGACGTGTAGTACTTTTCTCTCTCGGTACTTTGCGTTGTTATAGTC
TGTCTTGTCGTCCTTGTGATTGTTGTTTTGAGGCGTTATTTTATTTACTA
CTTTTTTGTGCTCTTTTCTTTTTCATTTACGCTTTATTCCTATTTACTTT
TTTGATGCTTTCATTTGTTATCTCTTTGTTGAAATATTGCTATTTCGTAC
GTTTCTGTGCTTATGTTGGACTTATTCTACTTGCTGTTTGGGTCTAGTGT
AATCATGGGGGTTATTTGTGTTCGATTTCGCCCAGTTTACTGTTACGCTT
GTGGTTGCTCATATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_h15.b1 MSMg01no409_h15.b1 CHROMAT_FILE:
MSMg01no409_h15.b1 PHD_FILE: MSMg01no409_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:51 2005
         (422 letters)



>mm_chr2_59294673_59295494
          Length = 822

 Score =  752 bits (389), Expect = 0.0
 Identities = 395/397 (99%)
 Strand = Plus / Minus

                                                                       
Query: 26  aggcagccaggatcttcctccactgggtggagcttgtactgatatataagctctcaacgc 85
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 822 aggcagccaggatcttcctccactgggtggagcttgtactgatatataagctctcaacac 763

                                                                       
Query: 86  ctacctccacagtgacacacttcctccaacaagaccacaactagtctaacaagaccttac 145
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 762 ctacctccacagtgacacacttcctccaacaagaccgcaactagtctaacaagaccttac 703

                                                                       
Query: 146 cttctaatagtgccattccctatggtccaaaccatcaaatacatgaatctatgggagcca 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cttctaatagtgccattccctatggtccaaaccatcaaatacatgaatctatgggagcca 643

                                                                       
Query: 206 tacctattcaaatcaccacaaattgatatcctgaaaatgatagtcatagaaaaaaattca 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tacctattcaaatcaccacaaattgatatcctgaaaatgatagtcatagaaaaaaattca 583

                                                                       
Query: 266 cataaactgtgccattggggtgctatggtttgaatatcattcaattatttagtcatgtcc 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cataaactgtgccattggggtgctatggtttgaatatcattcaattatttagtcatgtcc 523

                                                                       
Query: 326 acaaaggatctattacgattgaaagcttgtgtctcaaactattcaaataacaaaaccttt 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acaaaggatctattacgattgaaagcttgtgtctcaaactattcaaataacaaaaccttt 463

                                                
Query: 386 gaaagtaaaccctggcagggatccttctgtcttaagg 422
           |||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaaagtaaaccctggcagggatccttctgtcttaagg 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no409_h15.g1 MSMg01no409_h15.g1 CHROMAT_FILE:
MSMg01no409_h15.g1 PHD_FILE: MSMg01no409_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:51 2005
         (143 letters)



>mm_chr2_59166825_59167367
          Length = 543

 Score =  261 bits (135), Expect = 1e-74
 Identities = 141/143 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagatcctgagtacttcaaattaaagaatttcctagatttttaaaaatatttgcactt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tagagatcctgagtacttcaaattaaagaatttactagatttttaaaaatatttgcactt 260

                                                                       
Query: 61  tactaaactatctcagatttggggcttttataatactcagcctatatagtggttgagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactaaactatctcagatttggggcttttataatactcagcctatatagtggttgagagg 320

                                  
Query: 121 agatggtataagtttaataagtc 143
           ||||||||||||||||| |||||
Sbjct: 321 agatggtataagtttaaaaagtc 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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