BAC Information

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BAC

Clone NameMSMg01-409J05
Chromosome2 (Build37)
Map Location 45,070,469 - 45,070,932
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap15, Gtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409J05.T7 (MSMg01no409_j05.b1)MSMg01-409J05.TJ (MSMg01no409_j05.g1)
ACCAG507027AG507028
length824878
length of high quality
(start - end)
467 (45 - 511)228 (74 - 301)
definitionCHROMAT_FILE: MSMg01no409_j05.b1 PHD_FILE: MSMg01no409_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:59 2005CHROMAT_FILE: MSMg01no409_j05.g1 PHD_FILE: MSMg01no409_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATGACAAAATAATTTTCCATTATTTAGAAGAGAAAGAATATAAC
TGACTTATTTTTTATTGTTGGATATTTAGCTTCTTTGTAATTTTTTCATT
ATGAAGAACATCATTCCCACAAACATTTTTCTGCAAGTGTATTTAAAAGT
ACAATTAATATTGTATTCAATATATGAATATTTTAAAAGGAATTTAACCT
AAGTGCTTTTCTGAAAACTTGTAACAATTTATCTGCACTTCAGTATTTTC
TAATAGATTTGTCATCTTCAAATCGTGACTTTTAAAAGTTTTGACATATT
CTGAAGGGGATGGCTGTGGAGGTCCTGCTTTTCTTGCCCAGTTCCCAGCT
GAGCAAAGCCAGCAATGACTAAGGTGTTCTTGAACCCCAGACTGATGAGA
CGCTCATCACAGAGGCTCTTTTACATCTGTGCATATGTTGTTTCCCTGGC
TAGAATTTCACCAGTAATAACAAAAGTTACTCAGTAGCCCATTAAATAAA
GCATTTTCTTCTATCACACAAACATACACACATATAGTCTCAATTATAAC
CTACTATTACTTTCTCTCGCCCATATCTTTTTCCCTTCACCCCCCCCTTT
ACTCTCTACCTCCGGGTTACCTACTTATGTTATCTCCTATTTACCCTATC
TTATCCATTTTAATACCCTATACCCAAACTCTCACCTTTATCCCCACTCT
TTTCCCTCCCCTCATCCTCTACCAATTCCTATTTCTCTTATTTATTTGTT
TCCAACGCTATATCTCTCACCTAN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTCTGTCTCTATATTATTTCATGGC
TTTTTTGTTTGGCTCTTTTTTCCTGTTTGATTATTTGTTTGTTTCATAAT
ATTCTGGTTTGGTTGAGTTTATTTTATTATCATTTTTATTTTTAGATACC
TGTTTGTTTTCTCATGAGAGTGGGACAGAGAGTGTGTGTATTTGGATAGG
TGGGGAATTGCAAGACTCTGGGTGGAATTTGGGAGGAGGAAATATTAATC
AGAATATGGGGTTTAGAAGATATTTTTTTTATNTAAGAGAGATGGATTAG
AGTTGTTTGTGTGTTTTTGTGATTCGTTTGTGTTGTTTGTATGTTAGATT
TTATAGAGTTTATTATTTTTTATATAATTATTGTATCGCTTTCTTCTTTT
TTTTTTTCCCCCTTTGTTTTTGCTCTCCCTCTTCATTTCTTTCTTCTTTT
TCTTCTTCTTTTCTCCTCCTCTATATCTTTCTCTTTCCTTTTTACCACAT
CTTTTTTCTCCGCTTTTCCCTATTTACTTTTTCTCCTTTCTCTTTTTCTT
CTTTCTCCTCCTCTCTTTCTCATCCGCTTACCTTTTCCTACATATTTTTT
CCCATATTTTTTACTTAACATTTGCCCTCTCTCTTTCTTTTTCCTTTATT
AGTTTTCACTTTCTCTCCTTTCTTATCATATTATCTTTATATTCGTTTTC
CTATCTTTTCTTAACTCTCTTCCGTTGTTTACTCCCTCTCTTTTCTCGTA
CATCTTCATCTTTTATGCATTTCCTCTATTTAATTTTGCGAAAGATTTAA
CTGTACTTTTTACTAATTCTTATTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_j05.b1 MSMg01no409_j05.b1 CHROMAT_FILE:
MSMg01no409_j05.b1 PHD_FILE: MSMg01no409_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:59 2005
         (467 letters)



>mm_chr2_45070265_45071132
          Length = 868

 Score =  828 bits (428), Expect = 0.0
 Identities = 455/464 (98%), Gaps = 1/464 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagatgacaaaataattttccattatttagaagagaaagaatataactgacttat 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcagatgacaaaataattttccattatttggaagagaaagaatataactgacttat 264

                                                                       
Query: 65  ttttt-attgttggatatttagcttctttgtaattttttcattatgaagaacatcattcc 123
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 ttttttattgttggatatttagcttctttgcaattttttcattatgaagaacatcattcc 324

                                                                       
Query: 124 cacaaacatttttctgcaagtgtatttaaaagtacaattaatattgtattcaatatatga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacaaacatttttctgcaagtgtatttaaaagtacaattaatattgtattcaatatatga 384

                                                                       
Query: 184 atattttaaaaggaatttaacctaagtgcttttctgaaaacttgtaacaatttatctgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atattttaaaaggaatttaacctaagtgcttttctgaaaacttgtaacaatttatctgca 444

                                                                       
Query: 244 cttcagtattttctaatagatttgtcatcttcaaatcgtgacttttaaaagttttgacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttcagtattttctaatagatttgtcatcttcaaatcgtgacttttaaaagttttgacat 504

                                                                       
Query: 304 attctgaaggggatggctgtggaggtcctgcttttcttgcccagttcccagctgagcaaa 363
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 505 attctgaaggggatggctgtggaggtcctgcttttcttgcccacttcccagctgagtaaa 564

                                                                       
Query: 364 gccagcaatgactaaggtgttcttgaaccccagactgatgagacgctcatcacagaggct 423
           |||||||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 565 gccagcaaagactaaggagttcttgaaccccagactgatgagaagctcagcacagaggct 624

                                                       
Query: 424 cttttacatctgtgcatatgttgtttccctggctagaatttcac 467
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttttacatctgtgcatatgttgtttccctggctagaatttcac 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space:   392106
Effective search space used:   392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)