BAC Information

Click to search

BAC

Clone NameMSMg01-409J17
Chromosome2 (Build37)
Map Location 121,955,605 - 121,955,974
singlet/doubletsinglet
Overlap gene4930424G05Rik
Upstream geneLcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1
Downstream geneB2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409J17.T7 (MSMg01no409_j17.b1)MSMg01-409J17.TJ (MSMg01no409_j17.g1)
ACCAG507051AG507052
length795758
length of high quality
(start - end)		421 (49 - 469)422 (77 - 498)
definitionCHROMAT_FILE: MSMg01no409_j17.b1 PHD_FILE: MSMg01no409_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:01 2005CHROMAT_FILE: MSMg01no409_j17.g1 PHD_FILE: MSMg01no409_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTCAATTGTCGATCTCGGATGAGGGCCATTCTATATTCTGG
ATATCATTTGCTTTAGGCGAATAATTTGTACACATTTTCTTCATACGTGT
GCATGACATGATATGCATATGGAGCTCAGAGGACAATTTAGGAGACTCAT
CTCCCACCATGTGGGTCCTGAAGATTGAACTCAGACTGTGTTTTTACTAA
TTGGCGCACCTTACTGGCCCTTGTACATAGGGTTCTTGGTATACAGATAC
TTTTAATTTTGATGTCTGATTTATTCTCTTTTGAGACAAGCTTTCATGTA
TCCCAGGCTGGCCTTCTGCTCACAGAGTTGTCTTCCTCTGCCTCCTGAGT
AATGAGATTAAAGGTGTTAGAGTACAGTTAGGTCATTAGGCTTTGGGGGG
AGGGGCAAGGGTTTGTTTTGTTTGTTTTTGTGNTTGTNTTTTTNTGNTNT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTGTNNTTTTTTTTTTGTTTTTT
GGTTTTGTTTTTGTTTGTTTTTGTTTTGTGTTGTTTTTTTTTTTGTTTTT
TCTTTTTTGTCGTGTTGTGGTTTTTTTCTGTGTNTGTTTCTTTCTCTCTT
TCCTCTCGTTTCTTTTTTTTTTTTTTTTTTGCCCTTCGTTTTCCTTTTTT
CCCTTCTTTTTTCCCCTTCCTTTTCTGCCTCTTTTTTCTTCCCTTTTCTT
TCCTTTCTTTTTCTCTTGTCCTTCTTTTTCCGTTTCTTTTTTTCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGCCCAGGTTAGCCTTA
AACCCAAGTCATTCTTCCTTTCCTAACGTCCCAAGTGCTGGTCCAGGGTG
GACCACAACACTCAGTTGAGTTTTCTTGTTTGTTCTTGTTTTGTTGTTGT
TTGAGACAGCCTTGTGACGTCCAGGCTGGCCTCAAGTTTCCTAGGTAGCT
GAGGCTTCCCTTGAACTCCTGAGCCTCCTGTCTCCATCTCTCAAGTACTG
GCATCACCGGCCTGTGCTTCCACACCTGACTAAGGATTTTCTTTATTAGA
GTTCTCATACTTCTACACCACCTCCATAGTGAAGCATCCCAGCCCTTTAA
CAGGTGAGCAAGGGGCAGAGCTGAGCCTTCAAAAGCTAGGAGAAGCAAGC
AGGCCTTGGCCCAGGCTGCCATGGTTCATCTGTGGGAGGGACAGCATCAG
TCAGGTGGTGGTGTCCGTAACAGGGTGGCACTGTGCATAGAAAGTGGCTG
GTTGTTTTCTTGAGGTTTAAACAACTCCCCCTTTTGTTCTTCTTGGATTA
AATCTTTTCCTAAAATACCTATCTTTTTTATTATCATCCTCATTCCCTTT
CTTTTTATTTTATTTTTTCTTTCCCACCTTCTATTTTATCACTTAATACT
CCTAATTCTCTTCCTTTACTACCTATTCTACATTTTCCTCCCTTCACTCT
TTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_j17.g1 MSMg01no409_j17.g1 CHROMAT_FILE:
MSMg01no409_j17.g1 PHD_FILE: MSMg01no409_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:02 2005
         (422 letters)



>mm_chr2_121955153_121955974
          Length = 822

 Score =  716 bits (370), Expect = 0.0
 Identities = 370/370 (100%)
 Strand = Plus / Minus

                                                                       
Query: 51  cgtcccaagtgctggtccagggtggaccacaacactcagttgagttttcttgtttgttct 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 cgtcccaagtgctggtccagggtggaccacaacactcagttgagttttcttgtttgttct 763

                                                                       
Query: 111 tgttttgttgttgtttgagacagccttgtgacgtccaggctggcctcaagtttcctaggt 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tgttttgttgttgtttgagacagccttgtgacgtccaggctggcctcaagtttcctaggt 703

                                                                       
Query: 171 agctgaggcttcccttgaactcctgagcctcctgtctccatctctcaagtactggcatca 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agctgaggcttcccttgaactcctgagcctcctgtctccatctctcaagtactggcatca 643

                                                                       
Query: 231 ccggcctgtgcttccacacctgactaaggattttctttattagagttctcatacttctac 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ccggcctgtgcttccacacctgactaaggattttctttattagagttctcatacttctac 583

                                                                       
Query: 291 accacctccatagtgaagcatcccagccctttaacaggtgagcaaggggcagagctgagc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 accacctccatagtgaagcatcccagccctttaacaggtgagcaaggggcagagctgagc 523

                                                                       
Query: 351 cttcaaaagctaggagaagcaagcaggccttggcccaggctgccatggttcatctgtggg 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cttcaaaagctaggagaagcaagcaggccttggcccaggctgccatggttcatctgtggg 463

                     
Query: 411 agggacagca 420
           ||||||||||
Sbjct: 462 agggacagca 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |