Query= MSMg01no409_m01.b1 MSMg01no409_m01.b1 CHROMAT_FILE:
MSMg01no409_m01.b1 PHD_FILE: MSMg01no409_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:14 2005
(283 letters)
>mm_chr2_75736306_75736986
Length = 681
Score = 470 bits (243), Expect = e-137
Identities = 268/277 (96%), Gaps = 2/277 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtttaattctccattctagctggagatagtcttaaaatgtttctgtagaacag 64
||||||||||||| || |||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 205 gaattctgtttaagcctaaattctagctggagatagtcttaaactgtttctgtagaatag 264
Query: 65 ctgtatatcattatgtactatgtctgtcaagtcaaacaaaacttaggaaaaaaaatcaag 124
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 265 ctgtatatcattatgtactatgtctgtcaagtcaaacaaaac--aggaaaataaatcaag 322
Query: 125 ccaaacaaaattcaagggaaaaaaaagaatttagttataaaatgtcaattgaggctatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccaaacaaaattcaagggaaaaaaaagaatttagttataaaatgtcaattgaggctatag 382
Query: 185 aagtggtttttcttttaattaactaaaacaaaataaactttaacttttgtccgataatag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagtggtttttcttttaattaactaaaacaaaataaactttaacttttgtccgataatag 442
Query: 245 aaaaagtataaataaaatctattttctgaaggtagta 281
|||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaaagtataaataaaatctattttctgaaggtagta 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 681
Length adjustment: 9
Effective length of query: 274
Effective length of database: 672
Effective search space: 184128
Effective search space used: 184128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no409_m01.g1 MSMg01no409_m01.g1 CHROMAT_FILE:
MSMg01no409_m01.g1 PHD_FILE: MSMg01no409_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:14 2005
(463 letters)
>mm_chr2_75936113_75936974
Length = 862
Score = 781 bits (404), Expect = 0.0
Identities = 449/464 (96%), Gaps = 3/464 (0%)
Strand = Plus / Minus
Query: 1 tctctggctgcagagatgaatctcaaagatgtttagataggaccgaacttctcctcctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tctctggctgcagagatgaatctcaaagatgtttagataggaccgaacttctcctcctcc 603
Query: 61 cggcgtgatgctaatattctaagtggacagagcaagataaactacatccagcactgcccc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 602 cagcgtgatgctaatattctaagtggacagagcaagataaactacatccagtactgcccc 543
Query: 121 cgacactgaccacatcctgccgccgccagagtctctggattcgaaagtcagaagggaaag 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cgacactgaccacatcctgcagccgccagagtctctggattcgaaagtcagaagggaaag 483
Query: 181 gtcaagggggccatgctggagacaaggagacggagaagaatttacaagtgggggcttgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtcaagggggccatgctggagacaaggagacggagaagaatttacaagtgggggcttgac 423
Query: 241 actgttggaatttgtttcctgaataaacaatgttagactgtgaaatagataaacggacat 300
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 422 actgttggaaatcgtttcctgaataaacaatgttagactttgaaatagataaacggacat 363
Query: 301 tctataaaaggggtgtgtaaatagccacatgtttcttaagtgggggagctctcgtcaggt 360
||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 362 tctataaaaggtgtgtataaatagccacatgtttcttaagcggggg-gctctcgtcaggt 304
Query: 361 catgaaagagcaagcaaggcacttgggggtgagtcaaccttgtgttggtttttgtaatgt 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 catgaaa-agcaagcaaggcacttgggggtgagtcaaccttgtgttggtttttgtaatgt 245
Query: 421 gtgcattt-cctccatctgctctattcccttctttctcggtctg 463
|||||||| || |||||||||||||||| |||||||||| ||||
Sbjct: 244 gtgcattttcccccatctgctctattcctttctttctcgttctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 862
Length adjustment: 10
Effective length of query: 453
Effective length of database: 852
Effective search space: 385956
Effective search space used: 385956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
