NNCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATGGATCTCGATACTCAAAATGATAGTAGAGTATAGACATT
TGGACACAACCCCACCCCAAGCCCCAAGGGTCTTGAGCATTTGAGATTTC
AGCAGAGGATGAACCCTTTCAGATCACGCGTGCCTGGGCCCCAGTGACGA
TCTTGCACGCAGCAGAGAAAGAGGCTGCCTTCAGCTTTTGTCACAACAGC
CTGGCACCTGTATGGAGTGGCAACCCTGGGCCAGGTTACCCAGGATCCTG
ATTCAGTCAGCACGGATGAGAGTGGTGTCCCCTCTCAGGTCGTCTCCAGG
GTCTCTAAGACAATGGGAATGGGTGGAGAGGAGACAGCGAAACTTAGACA
GCGGCTGAGGTTGTGGTGGGGGCCGTGTAGGAGGGCAGAGGGAAGAGGTG
AGATGGGAGGATNGGAGTGNNNNNTGGGNTNTNTGTTAGGGAGTNTTTTA
TTTGTGTTTTTTTTTTTATTGGTTTNTTTGTTATTGTGTTTTTTGTTTTT
ATATTTTGTATAATATAAGTTTTTTTTTTTTTATAGAAGTTTTTGGTTGT
TATTGTATTTTTTATTTTGTATGAGAGTTGTTATTTTAATGTGTTAATGT
ATGATATATTTTTTTTTTATTTGTGTTTGTATGGATTTTTAGATATGTTT
AATTTTGAATTATTTTAGATTTATTGTGATTTATATTGTAGTTTGTTGTT
TGTATCGGTGGATGTTTTTTTATTTTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACATAAAGAACAAGTTCAAGGGTTGACTTTTACAAAGAACA
CCTCAACGTTTATGAGGAGGGGCCATAACAGAGGAAGCTGAAGAATTTGA
CCAACAAGGTATGAGGAAAGCCAGGAAGTGTGACACATTGGGGACCCCCT
GGAGAGAAATTTCAAAGGAAGATAAGGATCAGATATGCCAAACCTGCAGC
TGGATCAAATTATGTGAGCACCAAGGAATGATTCTTGGTGTCCTTGAGAT
CACTGGTTGTGTAGTGATTTCCTCCCATTAAAACATTCTATCCTGAAGGG
AAGCTAGTAAAGACTGAGGAAACGTTAAAGGAAGTTCAATAAGACTCAGG
AAGTAAACAACTCACAAATCTCAGCAAGTCCCTGAATCCAACTAGATGCA
CAAGACTCTTTGCTCTCCAAGGTTATTTAAGCAATAAGGACTGCTAAAGA
CATTTAGATCAACTGAGCTGCTTAGAAGAAACTCACCTGTGAAATTGCCT
ATAAGTCATCTGAGGAGTCCTAGGGATCCAGATTTTGTGAGGTGTCACTA
GGACAAAGGGTCCACGATGATGCTGTTTGTGATTTGCCCATGCTTCTGGA
GGAATCCCCAAAACTCCAGTTCCCTAAGTCAAACTTTGGTGGGACCTACT
TTGATCTGGTTTCTTAACGGGGAAATAACCTCATATGTTGGGTCTTTT

Query= MSMg01no409_p17.b1 MSMg01no409_p17.b1 CHROMAT_FILE:
MSMg01no409_p17.b1 PHD_FILE: MSMg01no409_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:34 2005
         (416 letters)



>mm_chr2_92833323_92834138
          Length = 816

 Score =  716 bits (370), Expect = 0.0
 Identities = 403/420 (95%), Gaps = 10/420 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatggatctcgatactcaaaatgatagtagagtatagacatttggacacaaccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaattccatggatctcgatactcaaaatgatagtagagtatagacatttggacacaaccc 718

                                                                       
Query: 65  caccccaagccccaagggtcttgagcatttgagatttcagcagaggatgaaccctttcag 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 caccccaaaccccaagggtcttgagcatttgagatttcagcagaggatgaaccctttcag 658

                                                                       
Query: 125 atcacgcgtgcctgggccccagtgacgatctt----------gcacgcagcagagaaaga 174
            |||| ||||||||||||||||||||||||||           |||||||||||||||||
Sbjct: 657 gtcactcgtgcctgggccccagtgacgatcttcacctcctacacacgcagcagagaaaga 598

                                                                       
Query: 175 ggctgccttcagcttttgtcacaacagcctggcacctgtatggagtggcaaccctgggcc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ggctgccttcagcttttgtcacaacagcctggcacctgtatggagtggcaaccctgggcc 538

                                                                       
Query: 235 aggttacccaggatcctgattcagtcagcacggatgagagtggtgtcccctctcaggtcg 294
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 537 aggttacccaggatcctgattcagtcagcacggatgagagtggcgtcccttctcaggtcg 478

                                                                       
Query: 295 tctccagggtctctaagacaatgggaatgggtggagaggagacagcgaaacttagacagc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tctccagggtctctaagacaatgggaatgggtggagaggagacagcgaaacttagacagc 418

                                                                       
Query: 355 ggctgaggttgtggtgggggccgtgtaggagggcagagggaagaggtgagatgggaggat 414
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggctgaggttgtggtgggggccatgtaggagggcagagggaagaggtgagatgggaggat 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)