CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCG
CGGAATTCCAAAATATTTTTCCACTAAAATAAAATGTTATGGCTCACATT
TCTCCAAGCATAAGCATAAACACAAATTTGAAACATTTAGTTGAGATGAG
GAAAAACTATCAGTTTGCCTGTAGTTCTAAATCACACTTTGAGGTCAAGA
AAGTAGCATTAATTGAGAATATATATTTTAATTTGAGCAGAGAAGTATAT
ATCAATCTTAGTAACCCAAAATCATTAAGTAAATATATACATACATATAC
ATATATATATATATGTATATATATATATATGTATATATATATATATATAG
AGAGAGAGAGAGAGAGAGAGCACAAAAGAGCCATTTATCCCATTTGGTGA
AAGACACATTTGCACTGATTACAGCCTTTTATATGCCCATTTATGCTCCC
AAGCTTCCTAGAATAGTTATTTCTCACCCCGTGATTCTAATATATACATC
CTATACTTTTATATGTACACTTCTACGGAACTAGTGACCGCTCCTTGTTC
CATGTGCTTTCTATTCTGATGCGTCATATACCCCCCAACGGCATTTCCTG
TCTTCTCTGCTCTCCACCTTCTTCTATTACGTTCATTTCATTACTCCATA
TTATTTCCCACTGCCTTTTTTTTTCTTCCTTCCCCCTCTTTAACCGCGCG
CTTATCCCCTTTTTACCCCTTTTTTCCCCCTTTTCCCCCGTTTTTTCCTT
CCCTTCTTTT

NNTTCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTCATTATGGGGAGGTAA
TACACGAACTGGCATTGGTAAGGTGAGAGAAAACTGATTGCCACAGATCA
CCCTCTCAAGCTTCCAGCCATCTGGGGAATACCATATGGAAGAGGGAGGA
GTTCAGAGAGGACTGGCGCTTAAATCATCATCAGGAGCCATTTTAGTTTT
CACTGGACTAGATTTGACTGTAAGATATGACTGTAGTCTTCACTCTAGGC
TTTGGGGTAACACTAGACTAAGTTATTATATCAGGTATACTGTTTTCTAG
CTATATAATTATTTCCAACTTAATTACATCTCTAAGTTGTAAATTATTTA
TTCATCAGTGACATGAGAATAATATTCACTTAGAGGAAAGTTTGTGATTG
CCAATGGAGGTACTGTAAAGTACCTACTCCCTGCCTTGCCCTCATCTGTG
GAGAGAATGATGCTTTATTTTCTATACCCATGTCTAGAACAAGCTTGAGA
AGACCTTGGTGCGATTAGGGTCAGAAAGAACTTCACAGGCTAGTGCCTTC
TGCTATTGAGTTCCGTCTATATATTAAGCAATTCTTTTTCATGCTAGATA
CAGATTGTGTATGCTTTCCCTTTTCAGGGCCTTCTCCTAGTATCCTTCTT
CTTCTTCCCTTCCTGCTTCCCTATCTTTTTACCTTTTT

Query= MSMg01no410_a12.b1 MSMg01no410_a12.b1 CHROMAT_FILE:
MSMg01no410_a12.b1 PHD_FILE: MSMg01no410_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:38 2005
         (296 letters)



>mm_chr2_107393520_107394215
          Length = 696

 Score =  480 bits (248), Expect = e-140
 Identities = 275/296 (92%), Gaps = 20/296 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaataaaatgttatggctcacatttctccaagcataagcataaacacaaatttgaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 taaaataaaatgttatggctcacatttctccaagcataagcataaacacaaatttgaaac 349

                                                                       
Query: 61  atttagttgagatgaggaaaaactatcagtttgcctgtagttctaaatcacactttgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atttagttgagatgaggaaaaactatcagtttgcctgtagttctaaatcacactttgagg 289

                                                                       
Query: 121 tcaagaaagtagcattaattgagaatatatattttaatttgagcagagaagtatatatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcaagaaagtagcattaattgagaatatatattttaatttgagcagagaagtatatatca 229

                                                                       
Query: 181 atcttagtaacccaaaatcattaagtaaatatatacatacatatacatatatatatatat 240
           |||||||||||||||||||||||||||||||||||            |||||||||||||
Sbjct: 228 atcttagtaacccaaaatcattaagtaaatatata------------tatatatatatat 181

                                                                   
Query: 241 gtatatatatatatatgtatatatatatatatatagagagagagagagagagagag 296
           ||||||||||||||||        |||||||| |||||||||||||||||||||||
Sbjct: 180 gtatatatatatatat--------atatatatgtagagagagagagagagagagag 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no410_a12.g1 MSMg01no410_a12.g1 CHROMAT_FILE:
MSMg01no410_a12.g1 PHD_FILE: MSMg01no410_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:38 2005
         (443 letters)



>mm_chr2_107217244_107218086
          Length = 843

 Score =  762 bits (394), Expect = 0.0
 Identities = 430/442 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtcattatggggaggtaatacacgaactggcattggtaaggtgagagaaaactgattg 60
           |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct: 201 gggtcattatggggaggtaatacatgaactggcattggaaaggagagagaaaactgattg 260

                                                                       
Query: 61  ccacagatcaccctctcaagcttccagccatctggggaataccatatggaagagggagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ccacagatcaccctctcaagcttccagccatctggggaataccatatggaaaagggagga 320

                                                                       
Query: 121 gttcagagaggactggcgcttaaatcatcatcaggagccattttagttttcactggacta 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcagagaggactggcacttaaatcatcatcaggagccattttagttttcactggacta 380

                                                                       
Query: 181 gatttgactgtaagatatgactgtagtcttcactctaggctttggggtaacactagacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttgactgtaagatatgactgtagtcttcactctaggctttggggtaacactagacta 440

                                                                       
Query: 241 agttattatatcaggtatactgttttctagctatataattatttccaacttaattacatc 300
           |||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttaaaataacaggtatactgttttctagctatataattatttccaacttaattacatc 500

                                                                       
Query: 301 tctaagttgtaaattatttattcatcagtgacatgagaataatattcacttagaggaaag 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaagttgtgaattatttattcatcagtgacatgagaataatattcacttagaggaaag 560

                                                                       
Query: 361 tttgtgattgccaatggaggtactgtaaagtacctactccctgccttgccctcatctgtg 420
           |||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct: 561 tttgtgattgccaatggaggcactgtaaagtacccacaccctgccttgccctcatctgtg 620

                                 
Query: 421 gagagaatgatgctttattttc 442
           ||||||||||||||||||||||
Sbjct: 621 gagagaatgatgctttattttc 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)