BAC Information

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BAC

Clone NameMSMg01-410B22
Chromosome2 (Build37)
Map Location 107,879,850 - 108,081,768
singlet/doubletdoublet
Overlap genenone
Upstream geneFshb, Kcna4
Downstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410B22.T7 (MSMg01no410_b22.b1)MSMg01-410B22.TJ (MSMg01no410_b22.g1)
ACCAG507443AG507444
length750792
length of high quality
(start - end)		358 (79 - 436)405 (79 - 483)
definitionCHROMAT_FILE: MSMg01no410_b22.b1 PHD_FILE: MSMg01no410_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:45 2005CHROMAT_FILE: MSMg01no410_b22.g1 PHD_FILE: MSMg01no410_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,879,850 - 107,880,207)(108,081,365 - 108,081,768)
sequence
GGGCTCTATATTTGGCGGCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCANAAGCCATCCTGGGCTACAATGGGAGTAATGTCCAACCTGG
GCTAAAGAGTGAATCTCTCTCCAACAACAAGAGTAACAACAACTAAGACC
CGAAACCTGAAGGAAGTTCTTTAGAGTACTAAAGCATTCTTAAACATCAG
TGACTCATAAGCAAGTATAAGTTCAAAATGACAATTATGAAAGTATTTAA
TATTGTTGAAAAGTTCATATATTTGTGTAGTATGTTGCTGGTTTTCATCA
AAATCAGACAAGACTTCTCCCCTTTATTTCAAAGATGTATAAAAAATGAA
GCATAATGATATTACATAAACAAGTAACATATAATGTGAAATTAGTTGGT
TGCATCCCTGCAGCTTGTAGAAGCAGCCACATGAACAGATCAGTGTCATA
AAGAATAAAACCATAAGCAGTGTTGGCAATTGCTTTTTCTCCTTTAACGA
GACAGATTGGACCTTTCAGAATGATGAATGCTATGATAGCAAATACGAAC
GACGAATCTACTTAAGTACCCATTTTACCATATGCACGACATGTGACTCA
TGTGTGTGGTTTCTTTACCCACTGGCCGTTACCCTCTAGTTCTGGATCGT
CATCCGGCGCCTTGTCCTACCTTTTCTTCCTTTTTTAGGCTCCTATGGAT
TCGCTACTCGCGTTTTCACCTCCTATAAGCTTTTACTCTTCTTTTCCCCG


NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATTGAAAACAACGCTAAG
CAGTGACTATGGAAATTTTTGCTGATAAATCTAAAATTAAAAATATGTAT
TTATTTTTATTAATTAAAAAATTAAGATGTGGTTGTAGGATGTATCTGAA
TATTCTGGTTGGGATAGAAAGGATACAAAGAATCTCAGGTGTTCATTGAA
ACTATCTTTATGAGTAAAGAATCAGAAATATCACAAGAAATACGGGCATT
ATTCACTCTATTTCTAAAACTTGAGAACTAGCCATTGTTAAACAACCCTA
TTTTTAAAAAATCATTTTAGCAAGCACATTTGGGCTAAATTTAAGTTTGC
TTTGTACATAAAAGTAATATTGTGTAATTATGGAGAAAATTTCAGATGAA
TTTCAATTGTGGGCATTGATGCAAAAATCTCAATTTTTGGTGGGTTGTTG
AGCAGGGTGTTCCCCCCCCCTCTCTCCCCTTTCCTTCCCCTCTTCTCTCT
CTTTTTCTTTCCCCCCCCCCCTCCCTCCTCTTCCTCCCCTCTTCTTTTTC
TTCTTCTGCTTACTTCATCTCTCCCCTCTTTCCCCTTACCTTTTCCCTTT
TCCTCATCTCCCCCCCCTTATCCTATCCCCTCTTCTCTCCGTCTCTCCCT
CCCTCCCTTTCCGCTTCCCTCTCCCTTCCCACCCTTCTCTTCCCCTTTCC
TCTTTTCTTTTTCCCTTTTCTTTTTTTCCTCCTCCTTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_b22.b1 MSMg01no410_b22.b1 CHROMAT_FILE:
MSMg01no410_b22.b1 PHD_FILE: MSMg01no410_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:45 2005
         (358 letters)



>mm_chr2_107879650_107880407
          Length = 758

 Score =  669 bits (346), Expect = 0.0
 Identities = 355/358 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggagtaatgtccaacctgggctaaagagtgaatctctctccaacaacaagagtaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgggagtaatgtccaacctgggctaaagagtgaatctctctccaacaacaagagtaaca 260

                                                                       
Query: 61  acaactaagacccgaaacctgaaggaagttctttagagtactaaagcattcttaaacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaactaagacccgaaacctgaaggaagttctttagagtactaaagcattcttaaacatc 320

                                                                       
Query: 121 agtgactcataagcaagtataagttcaaaatgacaattatgaaagtatttaatattgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgactcataagcaagtataagttcaaaatgacaattatgaaagtatttaatattgttg 380

                                                                       
Query: 181 aaaagttcatatatttgtgtagtatgttgctggttttcatcaaaatcagacaagacttct 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 aaaagttcatatatttgtgtagtatgttgccggttttcatcaaaatcagacaagacttct 440

                                                                       
Query: 241 cccctttatttcaaagatgtataaaaaatgaagcataatgatattacataaacaagtaac 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 441 cccctttatttcaaagatgtataaaaaatgaagcaaaatgatattacataaacaagtaat 500

                                                                     
Query: 301 atataatgtgaaattagttggttgcatccctgcagcttgtagaagcagccacatgaac 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atataatgtgaaattagttggttgcatccctgcagcttgtagaagcagccacatgaac 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no410_b22.g1 MSMg01no410_b22.g1 CHROMAT_FILE:
MSMg01no410_b22.g1 PHD_FILE: MSMg01no410_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:45 2005
         (405 letters)



>mm_chr2_108081117_108081921
          Length = 805

 Score =  743 bits (384), Expect = 0.0
 Identities = 399/404 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaattgaaaacaacgctaagcagtgactatggaaatttttgctgataaatctaaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agaaattgaaaacaacgctaagcagtgactatggaaatttttgctgataaatctaaaatt 593

                                                                       
Query: 61  aaaaatatgtatttatttttattaattaaaaaattaagatgtggttgtaggatgtatctg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 592 aaaaatatgtatttatttttattaattaaaaaatgaagatgtggttgtaggatgtatctg 533

                                                                       
Query: 121 aatattctggttgggatagaaaggatacaaagaatctcaggtgttcattgaaactatctt 180
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 532 aatattctggttgggatagaaaggatacaaagaatctcaggcgttaattgaaactatctt 473

                                                                       
Query: 181 tatgagtaaagaatcagaaatatcacaagaaatacgggcattattcactctatttctaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tatgagtaaagaatcagaaatatcacaagaaatacgggcattattcactctatttctaaa 413

                                                                       
Query: 241 acttgagaactagccattgttaaacaaccctatttttaaaaaatcattttagcaagcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 412 acttgagaactagccattgttaaacaaccctatttttaaaaaatcattttagcaagctca 353

                                                                       
Query: 301 tttgggctaaatttaagtttgctttgtacataaaagtaatattgtgtaattatggagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttgggctaaatttaagtttgctttgtacataaaagtaatattgtgtaattatggagaaa 293

                                                       
Query: 361 atttcagatgaatttcaattgtgggcattgatgcaaaaatctca 404
           ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 292 atttcagatgaatttcaattgtgggcattgatgcaaagatctca 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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