BAC Information

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BAC

Clone NameMSMg01-410G24
Chromosome2 (Build37)
Map Location 77,179,446 - 77,390,633
singlet/doubletdoublet
Overlap geneZfp533
Upstream geneCyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906
Downstream geneBC003993, LOC667920, OTTMUSG00000016703, LOC383717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410G24.T7 (MSMg01no410_g24.b1)MSMg01-410G24.TJ (MSMg01no410_g24.g1)
ACCAG507686AG507687
length768770
length of high quality
(start - end)
513 (78 - 590)148 (78 - 225)
definitionCHROMAT_FILE: MSMg01no410_g24.b1 PHD_FILE: MSMg01no410_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:11 2005CHROMAT_FILE: MSMg01no410_g24.g1 PHD_FILE: MSMg01no410_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,390,121 - 77,390,633)(77,179,446 - 77,179,586)
sequence
NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGCTTTTATACCGTGGGGATCATTCTGTTTATAAAAGGCACC
CTATAAAGTGAGTTCAGAATGGTTCACATATTAATGTTAGCCCTTTGTTC
TGAAGATATACTATAGGCAAGCAAATAAGTACCACAGGTCACCCTGAATC
ACACAGTCTACGGTGAAAGGCAGAAACAATCCAGTGTGCTTATATTCAGC
AATTGCATGAGGTAAGGTCATATAAATACCCAGGAGGCTCAGAAGACCAG
GCACGAGGACAGCTTGTAAGTGTCCTCTATTAGCCCGAAGCCAGAACTCA
TGCTGATTTTCAGTTTTTGCTTGGGTGCCATTGCTGTCCTACGTTGAGCA
TCGTCATTCCAATATGTGAGCCACGTGTCTTAAAAGCATCCTCCCTGAAT
CCAGTTATGTTGCTTCCAGCCCACTGTAAGCTGCTGGGTACCCAAAGCAC
ACCGATAAGCAGAGGCCTGCACCATCTTCCCCAGTCGCCATTCCAGTGGG
CGTGTCTCCCTCCTCATCTTACTTGACCTTTCTGCTGGGTTTATGAAGCT
CACCTCGTTTGCCCTCTGTGACATCAGGGTTGCCCTGGATTTTCCTCACC
CCCTTTCACTCTTGTNATGTCAGGNTCCTGGTGCTTCTCTTCCCAGCTTT
TACCTTTTCCCCAGGGAACCCCCATCACACAAATTGTTCTCTTATATAAC
AGTCCTGAACCCCCCTTT
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGGGTGGCGACGCCATATCT
CAAAGTGTTCAAGTCATTTGGCTGAAACAGCCTATTGATGTTTTAGACAG
GAACACGGATGTGCTTTGTCCCTTTCGCTTCGATTGTGTGGGAGTGTGTA
TGAGGAGGTGTGTGTGTGAGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTNNTNTNNNNNTNNNTTTT
TTTNNNNNNTTTTTTTTTTTTTNNNTNTTTTNTTTTTNTTTTTTTTTTTT
TNTTTTTNTNNTTTTTNTTTNTTNTTTTTTTTTTTTTTTTTTTNTTTTTT
NNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTTTTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTNTTTTTTTN
TTTTNNNCTNTTTTTTNTTTNTNTNTTTTTTTTTTTTTTTNTTTTTTNNT
TNTTTTTTTTTTNTTTTTTTTTTTNTTNNTTTTTTTTNNTTTTTTTTTTN
TTTTTTTTTCCTTTTTTNTTTTTTTTTNTTCCTTTCTTTTNNCTTTTTTT
NTTTTCTTCCCCTTCCCTCCCCTTTTCCCCCCTTTCCCCTCCTTTCTCTT
CCCCTCCTTTTTCCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_g24.b1 MSMg01no410_g24.b1 CHROMAT_FILE:
MSMg01no410_g24.b1 PHD_FILE: MSMg01no410_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:11 2005
         (513 letters)



>mm_chr2_77389921_77390833
          Length = 913

 Score =  938 bits (485), Expect = 0.0
 Identities = 506/513 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattctgtttataaaaggcaccctataaagtgagttcagaatggttcacatattaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tcattctgtttataaaaggcaccctataaagtgagttcagaatggttcacatattaatgt 654

                                                                       
Query: 61  tagccctttgttctgaagatatactataggcaagcaaataagtaccacaggtcaccctga 120
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| 
Sbjct: 653 tagccctttgttctgaagatatactataggcaagcaaataagtagcacgggtcaccctgt 594

                                                                       
Query: 121 atcacacagtctacggtgaaaggcagaaacaatccagtgtgcttatattcagcaattgca 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atcacacagtctacggtaaaaggcagaaacaatccagtgtgcttatattcagcaattgca 534

                                                                       
Query: 181 tgaggtaaggtcatataaatacccaggaggctcagaagaccaggcacgaggacagcttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgaggtaaggtcatataaatacccaggaggctcagaagaccaggcacgaggacagcttgt 474

                                                                       
Query: 241 aagtgtcctctattagcccgaagccagaactcatgctgattttcagtttttgcttgggtg 300
           |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aagtgtccacaattagctcgaagccagaactcatgctgattttcagtttttgcttgggtg 414

                                                                       
Query: 301 ccattgctgtcctacgttgagcatcgtcattccaatatgtgagccacgtgtcttaaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccattgctgtcctacgttgagcatcgtcattccaatatgtgagccacgtgtcttaaaagc 354

                                                                       
Query: 361 atcctccctgaatccagttatgttgcttccagcccactgtaagctgctgggtacccaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atcctccctgaatccagttatgttgcttccagcccactgtaagctgctgggtacccaaag 294

                                                                       
Query: 421 cacaccgataagcagaggcctgcaccatcttccccagtcgccattccagtgggcgtgtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cacaccgataagcagaggcctgcaccatcttccccagtcgccattccagtgggcgtgtct 234

                                            
Query: 481 ccctcctcatcttacttgacctttctgctgggt 513
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ccctcctcatcttacttgacctttctgctgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no410_g24.g1 MSMg01no410_g24.g1 CHROMAT_FILE:
MSMg01no410_g24.g1 PHD_FILE: MSMg01no410_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:11 2005
         (148 letters)



>mm_chr2_77179246_77179793
          Length = 548

 Score =  242 bits (125), Expect = 8e-69
 Identities = 137/141 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagggtggcgacgccatatctcaaagtgttcaagtcatttggctgaaacagcctattg 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagggtggtgacgccatatctcaaagtgttcaagtcatttggctgaaacagcctattg 260

                                                                       
Query: 61  atgttttagacaggaacacggatgtgctttgtccctttcgcttcgattgtgtgggagtgt 120
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 261 atgttttagacaggaacacggatgtgctttgtccctttcacttcgattgtgtgggaatgt 320

                                
Query: 121 gtatgaggaggtgtgtgtgtg 141
           ||||||||||| |||||||||
Sbjct: 321 gtatgaggaggggtgtgtgtg 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)