BAC Information

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BAC

Clone NameMSMg01-410L14
Chromosome2 (Build37)
Map Location 164,550,132 - 164,683,364
singlet/doubletdoublet
Overlap geneWfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp
Upstream genePkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293
Downstream geneF730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410L14.T7 (MSMg01no410_l14.b1)MSMg01-410L14.TJ (MSMg01no410_l14.g1)
ACCAG507906AG507907
length793766
length of high quality
(start - end)		244 (73 - 316)442 (81 - 522)
definitionCHROMAT_FILE: MSMg01no410_l14.b1 PHD_FILE: MSMg01no410_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:32 2005CHROMAT_FILE: MSMg01no410_l14.g1 PHD_FILE: MSMg01no410_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,683,121 - 164,683,364)(164,550,132 - 164,550,571)
sequence
NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGC
GGAATTCCAAGCTTCGCCTTGGCAAGCCGCTTTCTTCACTTTTCTCGCTC
TTTTAGGAGCGAGTCCCCCACTTGTCCAGACAACAGCTATGCTTGTCACA
GGCTCCGTACTGCCCTATCCACCCTCCCAACTGCCAGCGTCCCGCCCCGT
CCCCTCCCAGCCCCCAAGGAGGAGGGAAGAACCGCGGCGAGGAGGGGGGT
CGGAGGCCCAGACTTATAAAGGCTGCTGGACCCGCGCTACCCGCCAGACC
CCGCCGCCCGGATCCCCTTCTTTTTTCTGTCGCCCCACGTGACCGCACTA
CTAAGTGAGTTGGGGCGCGTCCCCATCGCATCCCCAGACCCTCGTGAGTT
GTGTGGCTCACTAAATCCAGGTGGGGAGGAGAGCGGATGAAGGACGGCTC
CGGTACGTGGCACCATACTGAATGCGTTATATCGTACCCTCATGACCTAC
TTCAGCCTATGCATTCTACGTTCTACTCCTCATCTTTTTCCCCCTCCCCC
CCGCCGTCTCTCATATCCTTTTCCCACTTCCCCCTTATTTCCCTCTTCCG
TTTCTTCCCTCCATTTCTACTTAATACTTACCTTCTTAATCTCCCTTTTT
CCCTATCCATAAATACAATTCTTCTTTTTTTTCTCCCCTTTTCTTCTATT
ATCCATTCTTTTTATCCTTCCTCCCTCTCCTTTCCCTTTCTTCTTCTTTT
TTCTCTCACCCATTCCTCATTTTATCTAATTCCATTTCCCACC

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCAACTAGGGCTACAC
AGAGAAACCCTGTGTCGAAAGAGTACAAGAAGAAGAAGAAAGGGGAATGA
CCAGACATACAAACGCAAGTGCATGCTTTGTCCCTTGCTGATGTTTGATG
ACACATCAGCACTCTACCAGCAAAACAACCGGAAGATGTGGCCCCTTGAT
CATAAACGTCAAGAACCAAGAGCCACAGTAAACTTGTTCCAGGTGTGTGA
CTGCAGCAGTGACAGATGCACTAATCCCTGACATGGACACTTCTAGTTTC
TCTGGAAGCTAGTTATGCCAAATGATGTTTTCCTGAAGCAGACACAGGTG
AAAGGATGTTTGCATATAGCAGACAGGTGAAAGGACGCTTGATGAAGGAG
TATAAATGCGACCCCACGGACAGTGGGAGAGGAGCACTGAGCATCGGTTT
GGTTTTTTTTTTTTTTTTTTACCNTTGCATTCCCCCCTACCACTGCCATT
GATAGAACCTCCCTCAAGAACTGCTCGCGAGTTTCCTTCCTCCGTTTGGT
GCTTCAATTGGCCCCACCTCGCGCTGAATTACCCATCTCAACATGGCCCT
CACGAATTTAACTGCACTTCGTCCTCCTCGCCCCCGTCCCTTTACCTTCC
CTCTCCCTCCCCCCTTCATTTCCCCTCCTCCTTCCTTTTCACCTGTTTTT
TTCTCCCCCCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_l14.b1 MSMg01no410_l14.b1 CHROMAT_FILE:
MSMg01no410_l14.b1 PHD_FILE: MSMg01no410_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:32 2005
         (244 letters)



>mm_chr2_164682921_164683564
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagccgctttcttcacttttctcgctcttttaggagcgagtcccccacttgtccagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caagccgctttcttcacttttctcgctcttttaggagcgagtcccccacttgtccagaca 385

                                                                       
Query: 61  acagctatgcttgtcacaggctccgtactgccctatccaccctcccaactgccagcgtcc 120
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcagctaggcttgtcacaggctccgtactgccctatccaccctcccaactgccagcgtcc 325

                                                                       
Query: 121 cgccccgtcccctcccagcccccaaggaggagggaagaaccgcggcgaggaggggggtcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgccccgtcccctcccagcccccaaggaggagggaagaaccgcggcgaggaggggggtcg 265

                                                                       
Query: 181 gaggcccagacttataaaggctgctggacccgcgctacccgccagaccccgccgcccgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaggcccagacttataaaggctgctggacccgcgctacccgccagaccccgccgcccgga 205

               
Query: 241 tccc 244
           ||||
Sbjct: 204 tccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no410_l14.g1 MSMg01no410_l14.g1 CHROMAT_FILE:
MSMg01no410_l14.g1 PHD_FILE: MSMg01no410_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:33 2005
         (442 letters)



>mm_chr2_164549932_164550773
          Length = 842

 Score =  828 bits (428), Expect = 0.0
 Identities = 437/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcaactagggctacacagagaaaccctgtgtcgaaagagtacaagaagaagaagaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacaactagggctacacagagaaaccctgtgtcgaaagagtacaagaagaagaagaa 260

                                                                       
Query: 61  aggggaatgaccagacatacaaacgcaagtgcatgctttgtcccttgctgatgtttgatg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggaatgaccagacatacaaacgcaagtgcatgctttgtcccttgctgatgtttgatg 320

                                                                       
Query: 121 acacatcagcactctaccagcaaaacaaccggaagatgtggccccttgatcataaacgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacatcagcactctaccagcaaaacaaccggaagatgtggccccttgatcataaacgtc 380

                                                                       
Query: 181 aagaaccaagagccacagtaaacttgttccaggtgtgtgactgcagcagtgacagatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaccaagagccacagtaaacttgttccaggtgtgtgactgcagcagtgacagatgca 440

                                                                       
Query: 241 ctaatccctgacatggacacttctagtttctctggaagctagttatgccaaatgatgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaatccctgacatggacacttctagtttctctggaagctagttatgccaaatgatgttt 500

                                                                       
Query: 301 tcctgaagcagacacaggtgaaaggatgtttgcatatagcagacaggtgaaaggacgctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctgaagcagacacaggtgaaaggatgtttgcatatagcagacaggtgaaaggacgctt 560

                                                                       
Query: 361 gatgaaggagtataaatgcgaccccacggacagtgggagaggagcactgagcatcggttt 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 gatgaaggagtataaatgcgaccccacggacagtgagagaggagcactgagcatcggttt 620

                               
Query: 421 ggtttttttttttttttttt 440
           ||||||||||||||||||||
Sbjct: 621 ggtttttttttttttttttt 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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