Query= MSMg01no410_l19.b1 MSMg01no410_l19.b1 CHROMAT_FILE:
MSMg01no410_l19.b1 PHD_FILE: MSMg01no410_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:33 2005
(249 letters)
>mm_chr2_92570088_92570737
Length = 650
Score = 455 bits (235), Expect = e-132
Identities = 244/247 (98%), Gaps = 1/247 (0%)
Strand = Plus / Minus
Query: 4 tatg-attatcataagatttgtgatcttttacccaggacagtttatgattcaggacagag 62
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tatgaattatcataagatttgtgatcttttacccaggacagtttatgattcaggacagag 391
Query: 63 acacattctattctggtagcttgaagctcttcctatgtggacttggtggctgtgggcagc 122
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 390 acacattctattctggtagctcgaagctcttcctatgtggacttggtggctgtgggcagc 331
Query: 123 cagaggctcaatcctggtggtctgctcatcttcctgaaggctgcagttccctgctctcta 182
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 caggggctcaatcctggtggtctgctcatcttcctgaaggctgcagttccctgctctcta 271
Query: 183 gtatccctctcttctttctggtcctccatgtggcctctggtcagatacctatcccatcat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtatccctctcttctttctggtcctccatgtggcctctggtcagatacctatcccatcat 211
Query: 243 tgtcctc 249
|||||||
Sbjct: 210 tgtcctc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space: 153840
Effective search space used: 153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no410_l19.g1 MSMg01no410_l19.g1 CHROMAT_FILE:
MSMg01no410_l19.g1 PHD_FILE: MSMg01no410_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:34 2005
(482 letters)
>mm_chr2_92369721_92370603
Length = 883
Score = 901 bits (466), Expect = 0.0
Identities = 478/482 (99%), Gaps = 1/482 (0%)
Strand = Plus / Plus
Query: 1 ctctctctgggaaattccagccgcgctggtcaataaaaccttaatgatgacagaagtttc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctctctctgggaaatttcagccgcgctggtcaataaaaccttaatgatgacagaaatttc 260
Query: 61 ccatctgtctctgctctgagcaggtaacccctgctacctagacaagggagaggacaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatctgtctctgctctgagcaggtaacccctgctacctagacaagggagaggacaagga 320
Query: 121 cggtgagagactgtcagcctggatgagccctgacccacctagaacacacactaggcacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggtgagagactgtcagcctggatgagccctgacccacctagaacacacactaggcacca 380
Query: 181 accagcgacaagactgccaagccaggcttgtcctgaattacctataccccgaagggggtg 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagcgagaagactgccaagccaggcttgtcctgaattacctataccccgaagggggtg 440
Query: 241 tttaacttctatttgtagaatgaataaaaa-gtatgtgttgctcgttgagttagaaaatg 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tttaacttctatttgtagaatgaataaaaaagtatgtgttgctcgttgagttagaaaatg 500
Query: 300 gccctaaggaccagagatatgactcagcgagttgcttgctcatcccgcaagtttcacatc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccctaaggaccagagatatgactcagcgagttgcttgctcatcccgcaagtttcacatc 560
Query: 360 ctgagttggatgtccggaacccacatggtaggaggaacgaataaactccttccaggttta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagttggatgtccggaacccacatggtaggaggaacgaataaactccttccaggttta 620
Query: 420 ttctgacttctgcccatgcagttatggcatacacgctgtctcccgcccccagtaacttta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgacttctgcccatgcagttatggcatacacgctgtctcccgcccccagtaacttta 680
Query: 480 aa 481
||
Sbjct: 681 aa 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
