BAC Information

Click to search

BAC

Clone NameMSMg01-410O07
Chromosome2 (Build37)
Map Location 123,192,416 - 123,192,902
singlet/doubletsinglet
Overlap genenone
Upstream geneShf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410O07.T7 (MSMg01no410_o07.b1)MSMg01-410O07.TJ (MSMg01no410_o07.g1)
ACCAG508036AG508037
length770732
length of high quality
(start - end)
166 (156 - 321)487 (83 - 569)
definitionCHROMAT_FILE: MSMg01no410_o07.b1 PHD_FILE: MSMg01no410_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:46 2005CHROMAT_FILE: MSMg01no410_o07.g1 PHD_FILE: MSMg01no410_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTTCCTCTCAGGGACTGTAATCCTTCTTCCTGTTCTTC
CATAAGAGTCCCAAAGCTTCTTCCACTGTTTGGAATGTGGGTGTCTGCAT
CTGTCTGTGTTTCTGAGTCTTCTACTAGGTGAAACCTCCCAGAGAACAGC
CATGCTAAACTCCTGTTTGCAATCACAACAGAAAATCTGTAATAGATTCA
GGGATTGTTGCTTGCCCATGGGATGAGATTCAAGTTGGGCTGGTTAGTGG
TTAGCCATTCCTTCAGTCTCTGTTTTTTTTCTAATCCCTGAATTTCTTGG
TGATAGGATGAGGGTTAGGTCAAAAGTTTTGCGGTTGGGATGGCCACAGG
AGGCAAACAAAGACCCAGAATTAACCCCATGGACACTTGATTTTTGCTAA
CGAATCAATTTTCATCCCTGGATCTAAGATAGCTTCTTCAAAAAATGGTG
CTGTTATACCTGGATGCTTACATGCACACCTATTGTCATTAGTCCCTTTT
TTATCTCCTTGCCTCTCCCCCTTTTCCCTTTCTCCTTCTTGACTTTTCTC
ATACTCTTCCCATCTTTCTCTTCTTTTTCACTACTATCCCCGTCTTCTTA
ATTCCCTCCCTTTACTCTTCGTTTTTTTTCCCTTCTTTTTCTCCACTTTT
TTCCCCTTTCTCCCTTTTTTCTTTTGCTCCTTTTCTCCTCTCCTTCCTTT
TTACGCCTTTTTTCGTTTAT
TTCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACCAATATGAGTTGACTGCTTC
TGTCTCTTAAGGATGTGAAGGCTGGCGCCAAGGAAGTAGGCGCCTTGCTC
ACTCCTTTTCTGACTCCTGTAGCTTAGCCAACCATCTGGAACACTCCCAC
CTTCTTCATTCAGTATCTGTGGAATAATTTAATTCTAGATGTTCTGAGTG
AAACATATTGGGGGAACCCTTGATGAGATGAGGAACAGTTTTAGAAGAAA
ACCTCAATGACACAGTGTAATGCACAATGTTTGAGGGAAGTCAGTGTTCT
TCACATAGCTATTGGAGGTCAATGTCTTGGTTTACCACAAAGTTGAAGAG
TTTCAGTGGCAACATAAATATTCCAATTTAAATGTTTTCAGTCCTCATCC
ATCATGTTGTCAGAAAGCCACTGTCCTCACATGTTTTAATGAATACACAG
TAATGGCATGAGACATCTAAGCTGGTCAGATTGTGTCAGCTAGTTCTTGC
ACCCCTCTTCCTAGCTGTTGCTAGTGGGTGATCTGAACACTCATCCTTTA
TGATCAAACTGGGAGTTACCCGAGGTTATAGCACGGAGTATATCACGTCA
CCTTTATCGTCTTTCTCCACACATTTGACATATTTTTCCTACTCTCTTCA
TTGACTTCCCCGAGTTCTAACCTCTTCCATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_o07.g1 MSMg01no410_o07.g1 CHROMAT_FILE:
MSMg01no410_o07.g1 PHD_FILE: MSMg01no410_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:46 2005
         (487 letters)



>mm_chr2_123192216_123193102
          Length = 887

 Score =  942 bits (487), Expect = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgagttgactgcttctgtctcttaaggatgtgaaggctggcgccaaggaagtaggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgagttgactgcttctgtctcttaaggatgtgaaggctggcgccaaggaagtaggcg 260

                                                                       
Query: 61  ccttgctcactccttttctgactcctgtagcttagccaaccatctggaacactcccacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttgctcactccttttctgactcctgtagcttagccaaccatctggaacactcccacct 320

                                                                       
Query: 121 tcttcattcagtatctgtggaataatttaattctagatgttctgagtgaaacatattggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcattcagtatctgtggaataatttaattctagatgttctgagtgaaacatattggg 380

                                                                       
Query: 181 ggaacccttgatgagatgaggaacagttttagaagaaaacctcaatgacacagtgtaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaacccttgatgagatgaggaacagttttagaagaaaacctcaatgacacagtgtaatg 440

                                                                       
Query: 241 cacaatgtttgagggaagtcagtgttcttcacatagctattggaggtcaatgtcttggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaatgtttgagggaagtcagtgttcttcacatagctattggaggtcaatgtcttggtt 500

                                                                       
Query: 301 taccacaaagttgaagagtttcagtggcaacataaatattccaatttaaatgttttcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taccacaaagttgaagagtttcagtggcaacataaatattccaatttaaatgttttcagt 560

                                                                       
Query: 361 cctcatccatcatgttgtcagaaagccactgtcctcacatgttttaatgaatacacagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctcatccatcatgttgtcagaaagccactgtcctcacatgttttaatgaatacacagta 620

                                                                       
Query: 421 atggcatgagacatctaagctggtcagattgtgtcagctagttcttgcacccctcttcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggcatgagacatctaagctggtcagattgtgtcagctagttcttgcacccctcttcct 680

                  
Query: 481 agctgtt 487
           |||||||
Sbjct: 681 agctgtt 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)