BAC Information

Click to search

BAC

Clone NameMSMg01-410P10
Chromosome2 (Build37)
Map Location 159,045,010 - 159,045,280
singlet/doubletsinglet
Overlap genenone
Upstream geneD630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410P10.T7 (MSMg01no410_p10.b1)MSMg01-410P10.TJ (MSMg01no410_p10.g1)
ACCAG508089AG508090
length873765
length of high quality
(start - end)
144 (87 - 230)280 (85 - 364)
definitionCHROMAT_FILE: MSMg01no410_p10.b1 PHD_FILE: MSMg01no410_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:51 2005CHROMAT_FILE: MSMg01no410_p10.g1 PHD_FILE: MSMg01no410_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGCATTGCACAAGACACCCGTCTCANAACTCTAGGTGGACA
CTGGATATGGTAGTGCATGCCTTTAATCTCAACACTAGGAAGACAGAAAT
AGGCACGTCTCTGAGTATGAGGCTGCTCTGGCCTACATAGTGAATTTTAC
CATTCAGGGGTATATGGGGGGGTGGTCATTGGCTACTCTTCCAGGGGATC
CTGTTTTGATTCCCAGCACCCACCTGGTAGGTCGCTATTATCCGTACTTC
CAGGATACCCCATGCCCCTCTTTCGTCCTTTTGCATTGATACTTATTGCC
TGTTATCTGCCTCATTATCGCTTTCTTTCATCACTCTCTTTCTCTCCTCC
CCTCCTTGCTCCCTCATTTTACTTGCTTTCGTTCCCCTCGCTTGCTGATG
CCTTTGCGCCCTTCCCCTTACTTTCCCGTTCCTCTTTTTCCTCCGCTTCC
GTCTTTCACCTCCTCCCCCCTTCTTTCGTCTCTTTTTTCTTTTTCTCTAT
TCCTTTCTCTTTCTTCCCTTATTTTCTCCCTTCTTCTCCCCCACTTTCCT
TCCGTTTTTTCCCTTTTCCCCCTTTTTCCCCCTCTTCTTTTCTCCCTTCC
CCTTCTCTTTCCCTTTCCTTCTTACTTCCTTCATACTTTACCTTCACACC
CCTCCCTTTTTCCCGCTATCCTCTTCTTCTCTCCTTCTATCCTTCTTTTC
TCTCTCTCCTTTTCTTTCCTTATTTCCCTTTCTTTTTCTTCCTNCTACCC
TTCTCCTCTTACCCTTTCTACGTCTATCTTTCCCTCCACCCTCCCACCCT
TTTTTCTACTTCACTTTCCCCCT
CAATTTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCATATCTGAGT
TGTCGCCCTTTCATTCAACTGTTTCCTTTGATTTTGTGGACTTTGATGCA
TTTCTGCTCTCTAAATTCTTTCAAGTGGTTATTTATGTAATTTGAGGATT
CTTTGGGCAGTATTACTGTGGGGTTTCTGAATTTTTTGATTAGGGATGGT
ATATTGTCTTGGTTTTTTTTTTTTTTATCTTTTTTCTTTTCAAGCTATGC
AGCTTTTAATTACCCAAATATAATTCTTTTTTTAAGTCTGCAGTTGGTTT
TTTTGGTTTTGTTTGCTTGTTTGTCTGCCTGTACAACACCCACAGGCTAC
CTCCTCCCTACCCCCTGTCTCTCTAGCCCTACTTCCCTCTTCCAAAGCCC
TCTGCTTCTTTTTCACAGTCGTCCTTTCCTCCCTTTCATCCTACCTTGTC
CCCATCCTCTCTTCCCTTCCCTTCCCCTCTTCTCTTCCTCTTCTTTTTCC
CTACCTATTCCTTTCTTCACCCCTTCTCCCTTCTTCCTCCCTTTTTCTAT
CTTCGCTCTCTCTCCTCCTTCTTTCCATTCTCAACCACCCCCCTCTTACC
TTCCCCCTCTTCTTTACTCTTTTCCCCCCTCCTCTCCCTTTCCTTCTCCT
TCCCGCATTTCCTTCCCCCTTCTCTCCTTCCATTTTCCCTTTTCTCTTTT
TCCTCCTCTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_p10.g1 MSMg01no410_p10.g1 CHROMAT_FILE:
MSMg01no410_p10.g1 PHD_FILE: MSMg01no410_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:52 2005
         (280 letters)



>mm_chr2_159044896_159045576
          Length = 681

 Score =  412 bits (213), Expect = e-119
 Identities = 260/281 (92%), Gaps = 11/281 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttcatatctgagttgtcgccctttcattcaactgtttcctttga-ttttgtggactt 59
           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 385 attttcatatctgagttgtcgccatttcattcaactgtttcctttgatttttgtggactt 326

                                                                       
Query: 60  tgatgcatttctgctctctaaattctttcaagtggttatttatgtaatttgaggattctt 119
           || || |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 tggtgtatttctgctctctaaattctttcaagtggttatttatgtaatttgagggttctt 266

                                                                       
Query: 120 tgggcagtattactgtggggtttctgaattttttgattagggatggtatattgtcttggt 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 265 tgggcagtattactgtggggtttctgaattttttgattggggatggtatattgtcttggg 206

                                                                       
Query: 180 tttttttttttttatcttttttcttttcaagctatgcagcttttaattacccaaatataa 239
           |||||        ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttttt--------atcctttttcttttcaagctatgcagcttttaattacccaaatataa 154

                                                    
Query: 240 ttctttttttaagtctgcagttggtttttttggttttgttt 280
           |||   ||||||||||||||||||||||||||  |||||||
Sbjct: 153 ttcaagttttaagtctgcagttggtttttttg--tttgttt 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 681
Length adjustment: 9
Effective length of query: 271
Effective length of database: 672
Effective search space:   182112
Effective search space used:   182112
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)