BAC Information

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BAC

Clone NameMSMg01-411A16
Chromosome2 (Build37)
Map Location 129,718,313 - 129,718,555
singlet/doubletsinglet
Overlap genenone
Upstream gene1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35
Downstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411A16.T7 (MSMg01no411_a16.b1)MSMg01-411A16.TJ (MSMg01no411_a16.g1)
ACCAG508148AG508149
length767875
length of high quality
(start - end)
250 (72 - 321)75 (77 - 151)
definitionCHROMAT_FILE: MSMg01no411_a16.b1 PHD_FILE: MSMg01no411_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:58 2005CHROMAT_FILE: MSMg01no411_a16.g1 PHD_FILE: MSMg01no411_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGTATCTCTAGGGATATAATAAACAAACAAACAAAATTA
AAAATGAAGAGGAGGAGGAGGAGGAAGGGAGGAGGGGAAAGGAAGAGAAT
TTTCACTTACTCTCTGGCTGTTCTTAGAAAAGGACCGGTCTCCACATTTC
AGTGGAGTAAACTTTTCACTTCATATTGCTTACTCTGTATGAACTTACAG
ATTACTATCCACCTGTACCCATTGGCCTCCAAGGACAAGTATAAGACTCT
GCTTTCTCAATGCCAGGCTTTTATGTTTAACCCAAAGTGGGTGCCTACAC
GGAGATGCCGAATGAATCATACCTGACCTAAGCCATCACGGCAGCTGCCA
TTCTCCTTCAAAACTGACAGTCAGAGCATTGATAGGGGTGGGCAGCCGTG
AACCTGGTCGATGATGGCTGGAGAACGACAGATAATAGGTGGACCTGTCA
CTTCTGATGCGAAAATGAAATTACTCTAGAACCCTGCCTCCTTACCTTGG
TTAACCTGTGCATCCTGCATCTCTCTATTTAACTAACTTTATCTTACTTC
TTATCTCCGCTTTCTCTGTGCTTTTCGTCCCCCTTTTCTTCGTTTCTTCT
TTTTTTTTTTTTTCCCCCTTTCCCTGTCCTTTATTTTTTATTCCTTTTCC
CTTCTTTCCCCTTTTTCTCCACCCGCTGGTTCCTCCCCTCCCTTATTTCC
TTTCCCTTCTCTCCCCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCAT
CATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGT
GGTCCTGAATTGGNCGAAAGTGGCGTTTCTGGGTCGAGGAGAGGAGGNNN
NGGTCCTGGCTTCCTGTAAAGGNNNNTCTTTACGTTTACCCTTTCGCCAT
CTGCTCTTGTGGNGANNAAGTGTGTTAAATTTGCTTTTATGAAAAAAAAC
CCTGTTCCCTGGAGTAGGAGGAAATTGCTCTATTTTCTTAAANGGGGGGG
GAAAAAAATCCTCCTCTCCCCCCATTATTTTCNGGGTTCAAACACTATTG
CTTCTCCCCTTAANTTTCTCTTTCTTCCCGACCAAAAAAGTTCANGGGCT
TTCCCGGCGGTTTTGGACCCTCCCCCTCGGGCCCAAGGGGTTAAANCCTC
NAAANAANGATTTTTTTCTCAAAAAACCTGTCTNTCCTCTTTGTCCCCTA
AACCTGTCCTAATTTTTTTTTTCTTTCTTTATTAACTTTCCCTTCTCTCC
CAAACTCTTCTCCTTCTTCTTTCCTTTCTCTCATCCTCTCTTTCTTTTCC
TCTTNTCCTCTTTTACTTACCTTTCTTAACACAACAACCGTGTGGCGTCC
NCCCTTCTCTCCCCCTTCTTTTTCCCCTCCCTCTCTTTTTTATTCCCCCC
GCCCGCCCCGGAACGTTTAAAACGAAAAAGAAAAATACATTTTCTCTTTT
TCTTTTTTNCTCTTTCCCTTTAGCTCACCCNTTTATATATTNTTACTCCA
TATTCCCGCCGGTGAGGGTGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_a16.b1 MSMg01no411_a16.b1 CHROMAT_FILE:
MSMg01no411_a16.b1 PHD_FILE: MSMg01no411_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:58 2005
         (250 letters)



>mm_chr2_129718110_129718758
          Length = 649

 Score =  416 bits (215), Expect = e-121
 Identities = 238/247 (96%), Gaps = 4/247 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggatataataaacaaacaaacaaaattaaaaatgaagaggaggaggaggaggaagggag 60
           ||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 204 gggatataataaataaacaaacaaaattaaaaatgaa---gaggaggaggaggaagggag 260

                                                                       
Query: 61  gaggggaaaggaagagaattttcacttactctctggctgttcttagaaaaggaccggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggggaaaggaagagaattttcacttactctctggctgttcttagaaaaggaccggtct 320

                                                                       
Query: 121 ccacatttcagtggagtaaacttttcacttcatattgcttactctgtatgaacttacaga 180
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ccacatttcagtggaataaacttttcacttcatattgcttactctgtatggacttacaga 380

                                                                       
Query: 181 ttactatccacctgtacccattggcctccaaggacaagtataagactctgctttctcaat 240
           |||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacaa-ccacctgtaaccattggcctccaaggacaagtataagactctgctttctcaat 439

                  
Query: 241 gccaggc 247
           |||||||
Sbjct: 440 gccaggc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 649
Length adjustment: 9
Effective length of query: 241
Effective length of database: 640
Effective search space:   154240
Effective search space used:   154240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)