BAC Information

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BAC

Clone NameMSMg01-411A17
Chromosome2 (Build37)
Map Location 69,729,272 - 69,729,509
singlet/doubletsinglet
Overlap genenone
Upstream geneLass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik
Downstream geneZfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411A17.T7 (MSMg01no411_a17.b1)MSMg01-411A17.TJ (MSMg01no411_a17.g1)
ACCAG508150AG508151
length762764
length of high quality
(start - end)
271 (47 - 317)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no411_a17.b1 PHD_FILE: MSMg01no411_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:58 2005CHROMAT_FILE: MSMg01no411_a17.g1 PHD_FILE: MSMg01no411_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGTGTTACATGAAAGTGGGAGCTGATGAGAATGAAATTTTCTT
TTCTTTTTCTTTTCTTTTTTTTTTTTTTTTGAGTTCCTTCTTTTTATTAA
CATATACCCAACTACTTGTCTTCTGGTTTGTTGAAGCAGTTAGGTCAGAC
AACACTTGCCACAGTAATGCCTGTCAAAGTGGCTTCCCATGAAAACTCCA
GCACCACACTCAACAGAAGGACAACTCTCGACGAAGTCGGCTATTTTGAC
GTTTTGGTCCGCCTTATATTATTTCAGCACAGCCAACTTAGACTTCTTCC
TCTTATGCTTACTCTTCCTGGGAGTGGTGTAAGACTTCTTCCTTCTCTTA
ACACCACCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTACGAATG
TCGTAGTCATTACAAGTCCGGCCATCTTTCAGCTGCTTATCAGTCAAGAT
CATGCTGATCTTGAAGAATTCCTTCCCTATTCTGTATCTTGGTCGTAATG
CGCAGGGTTCCCCTATTGGGTCTTCTACAAAACTGCCTCTAGGTGGTGGC
TCCCCCCTCTATGTCCTATTGTATAGTACACTCGCCTTTTTCCCACTTTC
CTTTCTTTGTTTTTGACTTAACCTTCCTTTCCTTTCATGCCCTCCTTTCC
AATTAACTTTAATAACCATCCATTTTCCCCCCCCTCTATTTAACTCTATT
ATATTTCGCCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCTTAGACTACAGAACA
AGTTTGCTTCTCAAAAAAAAAAACCTAAAAGAAGGGGAAGGTAGGGAGGC
TTAAGAGATATCTCAGAGGTTAAGAACACCTGTCACAGCCGGGCGTGGTG
GCACACGCCTTTATTCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCT
GAGTTCGATGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGC
TTTACAGAGAAACCCTGTCTTTTTTTACAAAAACAAAAAGAGAAACCCTG
TCTCGAAAAAGAAAAAACTAAATACAAAAAAACACCTGTCACTCTTCCAG
GGGACTCAGGTTCAGCTCCCTAACACAGGCAGTTTACAACCCCCTGGAAC
TGCTCTCCACAGTTGATGGCTTCTAGCGGGCGGGGAAGGATGACTCAGGT
TTCTTTAAGGTGTTGGCCGCTGGGAGCTTGGTTCCGTCCTAGCGAGTATT
TGGGCAATTCACACTGAATTCCTTCCTCTTCTCTCCTCCTCCTCCTTTCC
CTCTTCCCCCCTCTGGGTCTTCATTTTTGTCCGTACCATTCCCCCCTCCG
TTTGCTTTTATTTATGGTCAGTTTTGTTCCTTCCTTTTCGCTCTACTTAG
TTCGCCTTATTTCTTTCTTTCTTTTCTTCCATCCCCCTTCTTTCGTTGGT
CATTCAACCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_a17.g1 MSMg01no411_a17.g1 CHROMAT_FILE:
MSMg01no411_a17.g1 PHD_FILE: MSMg01no411_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:58 2005
         (241 letters)



>mm_chr2_69729203_69729840
          Length = 638

 Score =  435 bits (225), Expect = e-126
 Identities = 236/241 (97%), Gaps = 3/241 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccagcttagactacagaacaagtttgcttctcaaaaaaaaaaacctaaaagaaggg 60
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 307 aaggccagcttagactacagaacaagtttgcttctc---aaaaaaaacctaaaagaaggg 251

                                                                       
Query: 61  gaaggtagggaggcttaagagatatctcagaggttaagaacacctgtcacagccgggcgt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 250 gaaggtagggaggcttaagagatatctcagaggttaagaacacccgtcacagccgggcgt 191

                                                                       
Query: 121 ggtggcacacgcctttattcccagcactcgggaggcagaggcaggcagatttctgagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggtggcacacgcctttattcccagcactcgggaggcagaggcaggcagatttctgagttc 131

                                                                       
Query: 181 gatgccagcctggtctacaaagtgagttccaggacagccagggctttacagagaaaccct 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 130 gatgccagcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccct 71

            
Query: 241 g 241
           |
Sbjct: 70  g 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 638
Length adjustment: 9
Effective length of query: 232
Effective length of database: 629
Effective search space:   145928
Effective search space used:   145928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)