Query= MSMg01no411_f05.b1 MSMg01no411_f05.b1 CHROMAT_FILE:
MSMg01no411_f05.b1 PHD_FILE: MSMg01no411_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:19 2005
(546 letters)
>mm_chr2_103354408_103355354
Length = 947
Score = 696 bits (360), Expect = 0.0
Identities = 413/446 (92%), Gaps = 26/446 (5%)
Strand = Plus / Minus
Query: 112 aagaagtgctttaaactttagaaagtactttaatgtgtattattctatattgtcttggat 171
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 947 aagaagtgctttaaactttataaagtactttaatgtgtattattctatattgtcttggat 888
Query: 172 ccgtggtattcagcagcgctttctgccgtgatgggaatgccaagactacaccagtcacat 231
||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 887 ccgtggtattcagcagcgctttctgccatgatgggaatgc---------------cacat 843
Query: 232 gggcagcacagtggagggactgggctttcaaacacaaacccaatatatatacaggttctc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gggcagcacagtggagggactgggctttcaaacacaaacccaatatatatacaggttctc 783
Query: 292 atgaa----------acacacacacacacacacactggtgattaaaagaatgtct-aaaa 340
||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 782 atgaaacacacacacacacacacacacacacacactggtgattaaaagaatgtctaaaaa 723
Query: 341 aatgtataaacttacaaatcctattaaagcttgtttgttttattttacaaaggatacttc 400
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 722 aatgtagaaacttacaaatcctattaaagcttgtttgttttattttacaaagggtacttc 663
Query: 401 taccagtggactaaatggatgcttgggcaaaaatagaggatatctactatgaaactaact 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 662 taccagtggactaaatggatgcttgggcaaaaatagaggatatctactatgaaactaagt 603
Query: 461 ccatgtagtagaccatgtattccaaaatgtaataacaaattttagtccattgattgacaa 520
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 602 ccatgtggtagaccatgtattccaaaatgtaataaaaaattttagtccattgattgacaa 543
Query: 521 aatttggtggttttgtaaactaaaac 546
||||||||||||||||||||||||||
Sbjct: 542 aatttggtggttttgtaaactaaaac 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_f05.g1 MSMg01no411_f05.g1 CHROMAT_FILE:
MSMg01no411_f05.g1 PHD_FILE: MSMg01no411_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:20 2005
(424 letters)
>mm_chr2_103194145_103194973
Length = 829
Score = 762 bits (394), Expect = 0.0
Identities = 419/430 (97%), Gaps = 7/430 (1%)
Strand = Plus / Plus
Query: 1 catgatgaggttgggggcaggaagttgaggaggatgagggagagcaaagggaatac---- 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgatgaggttgggggcaggaagttgaggaggatgagggagagcaaagggaatacaatg 260
Query: 57 -aattgttatgacaaatgaggttatcaacaggcgatgtcactacatgaaggaggggcaga 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattgttatgacaaatgaggttatcaacaggcgatgtcactacatgaaggaggggcaga 320
Query: 116 gtggacctgaggtgaggaagagcctgtgagtgaacacattcttatttttaatgggaatat 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggacctgaggtgaggaagagcctgtgagtgaacacattcttatttttaatgggaatat 380
Query: 176 actcaagacatactggataagaaatacaaaatgccagagaagtcacgtaaacatcttact 235
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 actcaagacatactggataagaaatacaaaatgccagagaagtcatgtaaacatcttact 440
Query: 236 gagaagtatggcaagga-tgctagccagagccagaggagttagagctaacgcctgcgaag 294
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaagtatggcaaggact-ctagccagagccagaggagttagagctaacgcctgcgaag 499
Query: 295 gagcttatcaaaggctgtgttactatttgaaggcttaaactacacatgtgtgtttatttg 354
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagcttatgaaaggctgtgttactatttgaaggcttaaactacacatgtgtgtttatttg 559
Query: 355 attaaaatataataaggtaggagttcgaaaggtagctcagtcagtaaatgtttgccttgg 414
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attaaaatatagtaaggtaggagttcgaaaggtagctcagtcagtaaatgtttgccttgg 619
Query: 415 gagtgagaga 424
||||||||||
Sbjct: 620 gagtgagaga 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 829
Length adjustment: 9
Effective length of query: 415
Effective length of database: 820
Effective search space: 340300
Effective search space used: 340300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
