BAC Information

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BAC

Clone NameMSMg01-411G04
Chromosome2 (Build37)
Map Location 79,349,205 - 79,349,581
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
Downstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411G04.T7 (MSMg01no411_g04.b1)MSMg01-411G04.TJ (MSMg01no411_g04.g1)
ACCAG508409AG508410
length783839
length of high quality
(start - end)
276 (48 - 323)377 (132 - 508)
definitionCHROMAT_FILE: MSMg01no411_g04.b1 PHD_FILE: MSMg01no411_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:24 2005CHROMAT_FILE: MSMg01no411_g04.g1 PHD_FILE: MSMg01no411_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAAAGAGGATCCG
CGGAATTCAAAGAAATGCAAAAAAAAACCCAGTTCACGTTTGTCCAGACA
CAAGGTAGTTAAGATAGAAAAGGAAAGCCGGGCGTGGTGGCACATGCCTT
TAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGC
CAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGACTACACATAGAA
ACCCTGTCTCGAAAAACCAAACAAAAGGAAAAAAAAAAGAAGAAAAGAAA
AGGACAAAAGAAAGACAAAGAAGTTTATATTTATTCAGTAGGATAGTGGA
AGTTTATAATTATTCAGTAGAATAGTGGCTGTTTACTATCTGATGGCATT
GGGGCACTGGGTCCTTTAACTCCTATATTCTTGTTAAAAAGTGTATTATA
TATTCATTTTCCAACATCCCTTGACAATACTTTGAGATCTGATGTGAATA
ATTTTACATACAGCAAAAGAAATTAATTTGACTACTAATACAATTCTGGT
TTCCAATTGTCACTAAAACTCAAGACATCTCCCAATCCCCATGATATAAA
CCCTGCTGTGTCTGGAACTATTAGTTTCCTCCCCCGTGCACGTTTATCCC
CAAGGGCTCCTTTATCTTATTTTCCCCGAACGTCCTCGCAGGTTTCCTTA
TCCATAACTTCTCCCTCCTGACTCCATAACCACCCTGCCTATATTTCCTC
CCGTCCTTGTTCACCTTCCACTTAGCTCCCCCN
GATGTAGGTAGGGGCAGGANAGGAGAGGGAGGGTAGAGGAGGNNNGGGTG
ACTAGGNCACCATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCTTGGATGTTTGAAG
CTCCAAGTGATTAAGATTGACTTCTGAGCTATGGTCTATATATTGGATGT
GGCTTAGGTAGAATTCTAAAACTCATGTGACAAAGATCCTATCTCACAAA
CTGGAAAGAGTAAGGATTAGGTATGTGTGAATACAAAAGTAATTATGCGA
CCATCTTTCATTGCCTAGTCATTCAGCTTACCCGGAAAGAATAGAGCCAA
TCATGTAGATAGATGCTGTGTTTATTCTTTTGCTCTTTGGAGAAACTGGG
AATAGAAAAAGGATGATCAATATTTTCTATATACCAGAAAATCTTCAGAG
ATTGCAACACAGAAGTGAATTAGGATTAGAGCCTTGGGACTTAAAATGTA
CTGTGGACTAGAACTGCAATTTTCTGTATCTTCCGCTGCTACTGAAGTCA
TGTGGGTCTACCCATAGGTGCGTCTTAATCCAACCGATTGCCTAACCACG
ACAAAGCGTTTCGTTATCTCCCTATTTCTTGTCCCAGCCATATCATCTAC
TTTTCTCGTCTGCGCGTCTTATCCCCCCTTTATCCTGCCCTCCGGTTCCC
CTATCGTTTATTTTACCCGGACTCCTTTCTTTACCTTATCCTCACCTTTA
TTCCCCTTCATTCTATTTTATTATTCCTGTTCCCTCATCTTCCCCCTTTG
TGTGTCATTTTACCATTGGCCCCCCATTTTTTTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_g04.g1 MSMg01no411_g04.g1 CHROMAT_FILE:
MSMg01no411_g04.g1 PHD_FILE: MSMg01no411_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:24 2005
         (377 letters)



>mm_chr2_79349005_79349781
          Length = 777

 Score =  721 bits (373), Expect = 0.0
 Identities = 376/377 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgccttggatgtttgaagctccaagtgattaagattgacttctgagctatggtctatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgccttggatgtttgaagctccaagtgattaagattgacttctgagctatggtctatat 260

                                                                       
Query: 61  attggatgtggcttaggtagaattctaaaactcatgtgacaaagatcctatctcacaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggatgtggcttaggtagaattctaaaactcatgtgacaaagatcctatctcacaaac 320

                                                                       
Query: 121 tggaaagagtaaggattaggtatgtgtgaatacaaaagtaattatgcgaccatctttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaaagagtaaggattaggtatgtgtgaatacaaaagtaattatgcgaccatctttcat 380

                                                                       
Query: 181 tgcctagtcattcagcttacccggaaagaatagagccaatcatgtagatagatgctgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctagtcattcagcttacccggaaagaatagagccaatcatgtagatagatgctgtgt 440

                                                                       
Query: 241 ttattcttttgctctttggagaaactgggaatagaaaaaggatgatcaatattttctata 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattcatttgctctttggagaaactgggaatagaaaaaggatgatcaatattttctata 500

                                                                       
Query: 301 taccagaaaatcttcagagattgcaacacagaagtgaattaggattagagccttgggact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taccagaaaatcttcagagattgcaacacagaagtgaattaggattagagccttgggact 560

                            
Query: 361 taaaatgtactgtggac 377
           |||||||||||||||||
Sbjct: 561 taaaatgtactgtggac 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)